ALLEN BRAIN ATLAS API
Learn about the API with these atlas and resource overviews:
Example Applications and Source Code
Example RMA Queries for Experimental Metadata
Download colorized and labeled atlas images, histological images, SVG atlas graphics and the associated structure ontology.
The data model includes entities from molecular biology, anatomic atlases, laboratory artifacts, experiments, and annotations.
Download gene expression and mouse connectivity summary data re-sampled to a canonical 3-D reference space.
The SVG download service returns annotations associated with the specified SectionImage as scalable vector graphics.
The image download services serves whole and partial two-dimensional images presented on the Allen Brain Atlas Web site.
Download a hierarchical XML or JSON document containing each of the Structures in an Ontology.
Commonly requested queries for experiment metadata.
Image synchronization services use alignment results to find corresponding position between SectionDataSets, the 3-D reference model and structures.
Gene expression and projection statistics.
RESTful service for searching and retrieving data from the Allen Institute.
Search expert annotations of the Developing Mouse Brain Atlas' ISH data.
The Structure and Specimen Tree Search services return flat lists of ancestors and/or descendants for a specified structure or specimen.
For more detailed information, please refer to the Allen Brain Atlas Data Portal .