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CONNECTED SERVICES AND PIPES

service::dev_human_correlation

Parameters

set String Data set name: rna_seq_genes, rna_seq_exons, exon_microarray_genes or exon_microarray_exons
donors Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures Array Comma delimited list of Structure.id or Structure.acronym.
probes Integer Probe id to correlate against.
sort_order String (optional) 'asc' for ascending order, or 'desc' for descending order. Defaults to descending.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Examples

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_human_correlation[set$eqrna_seq_genes][probes$eq1090294][structures$eq'CBC']

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_human_correlation[set$eqrna_seq_exons][probes$eq279330730][structures$eq'CBC']

Retrieve exon_microarray_genes correlation values for structure with the acronym, "CBC".

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_human_correlation[set$eqexon_microarray_genes][probes$eq9463][structures$eq'CBC']

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_human_correlation[set$eqexon_microarray_exons][probes$eq280550735][structures$eq'CBC']

service::dev_human_differential

Parameters

set String Data set name: rna_seq_genes, rna_seq_exons, exon_microarray_genes or exon_microarray_exons
donors1 Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures1 Array Comma delimited list of Structure.id.
donors2 Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures2 Array Comma delimited list of Structure.id.
sort_by String (optional) 'p-value' or 'fold-change'. Defaults to 'p-value'.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Examples

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_human_differential[set$eq'rna_seq_genes'][structures1$eqDFC][structures2$eqMFC]

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_human_differential[set$eq'rna_seq_genes'][structures1$eqDFC][structures2$eqMFC]

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_human_differential[set$eq'exon_microarray_exons'][structures1$eqDFC][structures2$eqMFC]

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_human_differential[set$eq'exon_microarray_genes'][structures1$eqDFC][structures2$eqMFC]

service::dev_human_expression

Parameters

set String Data set name: rna_seq_genes, rna_seq_exons, exon_microarray_genes or exon_microarray_exons
probes Integer Probe.id to correlate against
donors Integer (optional) Comma delimited list of Donor.id to filter expression results.
structures Integer (optional) Comma delimited list of Stucture.id to filter expression results.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Examples

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_human_expression[set$eq'rna_seq_genes'][probes$eq1090294]

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_human_expression[set$eq'rna_seq_exons'][probes$eq279330730]

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_human_expression[set$eq'exon_microarray_genes'][probes$eq9463]

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_human_expression[set$eq'exon_microarray_exons'][probes$eq280550735]

service::dev_human_microarray_correlation

Parameters

donors Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures Array Comma delimited list of Structure.id or Structure.acronym.
probes Integer Probe id to correlate against
sort_order String (optional) 'asc' or 'desc'. Defaults to 'desc'.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_human_microarray_correlation[probes$eq1048426][structures$eqSG]

service::dev_human_microarray_differential

Parameters

donors1 Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures1 Array Comma delimited list of Structure.id.
donors2 Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures2 Array Comma delimited list of Structure.id.
sort_by String (optional) 'p-value' or 'fold-change'. Defaults to 'p-value'.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_human_microarray_differential[structures1$eqMZ][structures2$eqCP]

service::dev_human_microarray_expression

Parameters

probes Integer Comma delimited list of Probe.id to filter microarray expression results.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.
donors
Integer (optional)
Comma delimited list of Donor.id to filter microarray expression results.
structures
Integer (optional)
Comma delimited list of Structure.id to filter microarray expression results.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_human_microarray_expression[probes$eq1053223,1053224][donors$eq12566][structures$eq11587]

service::dev_mouse_agea

Parameters

seed_age String Age.id
map_age String Age.id
seed_point Array Comma delimited list of integers representing a point in the age's space.
seed_threshold Array Pair of floating point values representing the correlation seed age threshold.
map_threshold Array Pair of floating point values representing the correlation map age threshold.
contrast_threshold Array (optional) Pair of integer values representing the contrast domain threshold.
target_threshold Array (optional) Pair of integer values representing the target domain threshold.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_mouse_agea[seed_age$eq'E18.5'][map_age$eq'E15.5'][seed_point$eq4200,2380,2360]
[map_threshold$eq0.467,0.657][seed_threshold$eq0.811,0.924]

service::dev_mouse_correlation

Parameters

row Integer DataSet.id or Gene.id to correlate against.
structures Array (optional) Comma delimited list of Integer Structure.id or String Structure.acronym.
ages Array (optional) Comma delimited list of Age.name.
sort_order String (optional) 'asc' or 'desc'. Defaults to 'desc'.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::dev_mouse_correlation[row$eq13267][structures$eq'NP'][ages$eq'P14','P28']

service::gbm_correlation

Parameters

donors Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures Array Comma delimited list of Structure.id or Structure.acronym.
probes Integer Probe id to correlate against
sort_order String (optional) 'asc' or 'desc'. Defaults to 'desc'.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::gbm_correlation[probes$eq3551][structures$eqGBM]

service::gbm_differential

Parameters

donors1 Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures1 Array Comma delimited list of Structure.id.
donors2 Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures2 Array Comma delimited list of Structure.id.
sort_by String (optional) 'p-value' or 'fold-change'. Defaults to 'p-value'.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::gbm_differential[structures1$eqGBM][structures2$eqCTpan]

service::gbm_expression

Parameters

probes Integer Comma delimited list of Probe.id to filter microarray expression results.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.
donors
Integer (optional)
Comma delimited list of Donor.id to filter gbm expression results.
structures
Integer (optional)
Comma delimited list of Structure.id to filter gbm expression results.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::gbm_expression[probes$eq3551][donors$eq703393][structures$eqGBM]

service::gbm_ish_differential

Parameters

structures1 Array Comma delimited list of Structure.id.
structures2 Array Comma delimited list of Structure.id.
threshold1 Array (optional) Comma delimited Integer pair indicating thresholds for domain 1.
threshold2 Array (optional) Comma delimited Integer pair indicating thresholds for domain 2.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Examples

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::gbm_ish_differential[structures1$eqCTpnn][structures2$eqIT]

service::gbm_ish_expression

Parameters

structures Array Comma delimited list of Structure.id.
threshold Array (optional) Comma delimited Integer pair indicating thresholds.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Examples

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::gbm_ish_expression[structures$eqCTpnn][threshold$eq0,100000]

service::human_microarray_correlation

Parameters

donors Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures Array Comma delimited list of Structure.id or Structure.acronym.
probes Integer Probe.id to correlate against.
sort_order String (optional) 'asc' or 'desc'. Defaults to 'desc'.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::human_microarray_correlation[probes$eq1048426][structures$eq'FL']

service::human_microarray_differential

Parameters

donors1 Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures1 Array Comma delimited list of Structure.id.
donors2 Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures2 Array Comma delimited list of Structure.id.
sort_by String 'p-value' or 'fold-change'. Defaults to 'p-value'.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Examples

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::human_microarray_differential[structures1$eq4005][structures2$eq4006]

service::human_microarray_expression

Parameters

probes Integer Comma delimited list of Probe.id to filter microarray expression results.
donors
Integer (optional)
Comma delimited list of Donor.id to filter microarray expression results.
structures
Integer (optional)
Comma delimited list of Stucture.id to filter microarray expression results.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Examples

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::human_microarray_expression[probes$eq1014952][donors$eq9861,10021][structures$eq4079]

service::mouse_agea

Parameters

set String Data set name: mouse_coronal.
seed_age String An age identifier. P56.
map_age String An age identifier. P56.
seed_point Array A comma delimited triple indicating the coordinates of a point in 3-D SectionDataSet space.
correlation_threshold1 Float (optional) Correlation threshold for domain 1.
correlation_threshold2 Float (optional) Correlation threshold for domain 2.
threshold1 Array (optional) Comma delimited Integer pair defining the threshold for domain 1.
threshold2 Array (optional) Comma delimited Integer pair defining the threshold for domain 2.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::mouse_agea[set$eqmouse_coronal][seed_age$eqP56][map_age$eqP56][seed_point$eq6800,4200,5600]
[correlation_threshold1$eq0.84][correlation_threshold2$eq0.93]

service::mouse_correlation

Parameters

set String Data set name: mouse or mouse_coronal.
structures Array (optional) Comma delimited list of Structure.id or Structure.acronym.
row Integer DataSet.id to correlate against.
sort_order String (optional) 'asc' or 'desc'. Defaults to 'desc'.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::mouse_correlation[set$eqmouse][row$eq68918934]

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::mouse_correlation[set$eqmouse_coronal][row$eq357096]

service::mouse_differential

Parameters

set String Data set name: mouse or mouse_coronal.
structures1 Array Comma delimited list of Structure.id.
structures2 Array Comma delimited list of Structure.id.
threshold1 Array (optional) Comma delimited Integer pair indicating thresholds for domain 1.
threshold2 Array (optional) Comma delimited Integer pair indicating thresholds for domain 2.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Examples

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::mouse_differential[set$eq'mouse'][structures1$eq8][structures2$eq315]

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::mouse_differential[set$eq'mouse_coronal'][structures1$eq8][structures2$eq315]

service::mouse_connectivity_correlation

Parameters

row Integer SectionDataSet.id to correlate against.
structures Array (optional) Comma delimited list of Integer Structure.id or String Structure.acronym.
hemisphere String (optional) Structure’s hemisphere. Use 'Right' or 'Left'. Defaults to both hemispheres.
transgenic_lines Array (optional) Comma delimited list of Integer TransgenicLine.id or String TransgenicLine.name. Specify ID 0 to exclude all TransgenicLines.
injection_structures
Array (optional) Comma delimited list of Integer Structure.id or String Structure.acronym.
primary_structure_only
String (optional) 'true' or 'false'
sort_order String (optional) 'asc' or 'desc'. Defaults to 'desc'.
product_ids Array (optional) Comma delimited list of Integer Product.ids.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::mouse_connectivity_correlation[row$eq112162251][structures$eqTH][hemisphere$eqright][num_rows$eq100][transgenic_lines$eq0,177838259]

service::mouse_connectivity_injection_coordinate

Search for injection sites near a set of 3-D coordinates, ranking the results by their distance from the coordinates.

Parameters

seed_point Array A comma delimited triple indicating the coordinates of a point in 3-D space.
transgenic_lines Array (optional) Comma delimited list of Integer TransgenicLine.id or String TransgenicLine.name. Specify ID 0 to exclude all TransgenicLines.
injection_structures Array (optional) Comma delimited list of Integer Structure.id or String Structure.acronym.
primary_structure_only String (optional) 'true' or 'false'
product_ids Array (optional) Comma delimited list of Integer Product.ids.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::mouse_connectivity_injection_coordinate[seed_point$eq6600,5400,4800][transgenic_lines$eq0]

service::mouse_connectivity_injection_structure

Search by injection structures, ranking the results the results by signal in the target structures.

Parameters

injection_structures Array Comma delimited list of Integer Structure.id or String Structure.acronym.
target_domain Array (optional) Comma delimited list of Integer Structure.id or String Structure.acronym.
injection_hemisphere String (optional) 'Right' or 'Left'. Defaults to both hemispheres.
target_hemisphere String (optional) 'Right' or 'Left'. Defaults to both hemispheres.
transgenic_lines Array (optional) Comma delimited list of Integer TransgenicLine.id or String TransgenicLine.name. Specify ID 0 to exclude all TransgenicLines.
injection_domain Array (optional) Comma delimited list of Integer Structure.id or String Structure.acronym.
primary_structure_only String (optional) 'true' or 'false'
product_ids Array (optional) Comma delimited list of Integer Product.ids.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::mouse_connectivity_injection_structure[injection_structures$eqTH][injection_hemisphere$eqRight][target_domain$eqVIS][target_hemisphere$eqRight][transgenic_lines$eq0]

service::mouse_connectivity_target_spatial

Displays all SectionDataSets with projection signal density >= 0.1 at the seed point. This service also returns the path along the most dense pixels from the seed point to the center of each injection site.

Parameters

seed_point Array A comma delimited triple indicating the coordinates of a point in 3-D SectionDataSet space.
transgenic_lines Array (optional) Comma delimited list of Integer TransgenicLine.id or String TransgenicLine.name. Specify ID 0 to exclude all TransgenicLines.
section_data_set Integer (optional) SectionDataSet.id to filter the results.
injection_structures Array (optional) Comma delimited list of Integer Structure.id or String Structure.acronym.
primary_structure_only String (optional) 'true' or 'false'
product_ids Array (optional) Comma delimited list of Integer Product.ids.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::mouse_connectivity_target_spatial[seed_point$eq6600,5400,4800][start_row$eq25][num_rows$eq50]

service::nhp_lmd_microarray_correlation

Parameters

donors Array (optional) comma separated list of integers Donor ids. Defaults to all donors.
structures Array Comma delimited list of Structure.id.
probes Integer Probe.id to correlate against.
sort_order String (optional) 'asc' or 'desc'. Defaults to 'asc'.
start_row Integer (optional) starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::nhp_lmd_microarray_correlation[probes$eq30357][structures$eqBN]

service::nhp_lmd_microarray_differential

Parameters

donors1 Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures1 Array Comma delimited list of Structure.id.
donors2 Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures2 Array Comma delimited list of Structure.id.
sort_by String (optional) 'p-value' or 'fold-change'. Defaults to 'p-value'.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::nhp_lmd_microarray_differential[structures1$eqHF][structures2$eqBN]

service::nhp_lmd_microarray_expression

Parameters

probes Integer Probe.id to correlate against.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::nhp_lmd_microarray_expression[probes$eq15815]

service::nhp_macro_microarray_correlation

Parameters

donors Array (optional) Donor.id. Defaults to all donors.
structures Array Comma delimited list of Structure.id.
probes Integer Probe.id to correlate against.
sort_order String (optional) 'asc' or 'desc'. Defaults to 'asc'.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::nhp_macro_microarray_correlation[probes$eq49067][structures$eqBN]

service::nhp_macro_microarray_differential

Parameters

donors1 Array (optional) Donor.id. Defaults to all donors.
structures1 Array Comma delimited list of Structure.id.
donors2 Array (optional) Donor.id. Defaults to all donors.
structures2 Array Comma delimited list of Structure.id.
sort_by String (optional) 'p-value' or 'fold-change'. Defaults to 'p-value'.
start_row Integer (optional) starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Examples

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::nhp_macro_microarray_differential[structures1$eqHF][structures2$eqBN]

service::nhp_macro_microarray_expression

Parameters

probes Integer Probe.id to correlate against.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::nhp_macro_microarray_expression[probes$eq15815]

service::tbi_correlation

Parameters

donors Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures Array Comma delimited list of Structure.id or Structure.acronym.
probes Integer Probe id to correlate against
sort_order String (optional) 'asc' or 'desc'. Defaults to 'desc'.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::tbi_correlation[structures$eqHIP][probes$eq499304660]

service::tbi_differential

Parameters

donors1 Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures1 Array Comma delimited list of Structure.id.
donors2 Array (optional) Comma delimited list of Donor.id. Defaults to all donors.
structures2 Array Comma delimited list of Structure.id.
sort_by String (optional) 'p-value' or 'fold-change'. Defaults to 'p-value'.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::tbi_differential[structures1$eqFWM][structures2$eqTCx]

service::tbi_expression

Parameters

probes Integer Comma delimited list of Probe.id to filter microarray expression results.
start_row Integer (optional) Starting row of data for paging purposes. Defaults to 0.
num_rows Integer (optional) Number of rows of data for paging purposes. Defaults to 2000.
donors
Integer (optional)
Comma delimited list of Donor.id to filter gbm expression results.
structures
Integer (optional)
Comma delimited list of Structure.id to filter gbm expression results.

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::tbi_expression[donors$eq309335438][structures$eqPCx][probes$eq499304660]

service::text_search

Parameters

query_string String String to search for (* is a wildcard)
k String The model that is the type of object to search for (i.e. Gene)

Example

http://api.brain-map.org/api/v2/data/query.xml?criteria=
service::text_search[query_string$eq'abat'][k$eqGene]

pipe::list

Input

The output from the previous pipeline stage in json format.

Parameters

(left hand side of parameter) The variable id to be set in the pipeline namespace.
(right hand side of parameter) A string using simple path syntax.

Response

A comma separated list made up of the values found according to the path is assigned to the variable. More than one variable may be assigned in a single list pipe.

Notes

A pipe may not be used at the beginning or end of a query pipeline. Pipe::list may be used between model and service stages in any combination. The scope of a variable in a pipe::list stage is from the pipe to the end of the pipeline. Prefix a pipe list variable with a dollar sign ($) to reference it. Use the $in operator when referencing a pipeline variable set by pipe::list because the output is a list.

Fragment

pipe::list[gene_ids$eq'id'][probe_ids$eq'probes/probe/id']

Example

http://api.brain-map.org/api/v2/data/query.json?criteria=
model::Organism[name$il'*sapiens'],
pipe::list[xorganism_id$eq'id'],
model::Gene[organism_id$in$xorganism_id]

pipe::replace

Input

The constant string or variable passed into the input parameter

Parameters

pattern Regular expression pattern to match against
replacement String to replace the strings in input that match pattern.
input Variable obtained from pipe::list or a constant string.
output Name of a variable to assign the results to.

Response

A string with the substitutions applied is assigned to the output variable.

Fragment

pipe::replace[pattern$eq'a'][replacement$eq'b'][input$in'abcd'][output$eqexample]

Example

http://api.brain-map.org/api/v2/data/query.json?criteria=
model::Structure[acronym$eq'HiF'][ontology_id$eq7],
pipe::list[path$eq'structure_id_path'],
pipe::replace[pattern$eq'$'][replacement$eq'*'][input$in$path][output$eq'descendents'],
model::Structure[structure_id_path$il$descendents][ontology_id$eq7]

pipe::split

Input

The constant string or variable passed into the input parameter

Parameters

pattern A regular expression pattern to match against.
input A variable obtained from pipe::list or a constant string.
output The name of a variable to assign the results to.

Response

An comma-separated list of input string split where the pattern matched.

Fragment

pipe::split[pattern$eq'x'][input$in'axbxcxd'][output$eqexample]

Example

http://api.brain-map.org/api/v2/data/query.json?criteria=
model::Structure[acronym$eq'HiF'][ontology_id$eq7],pipe::list[path$eq'structure_id_path'],
pipe::replace[pattern$eq'(^\/)|(\/$)'][replacement$eq''][input$in$path][output$eq'path'],
pipe::split[pattern$eq'/'][input$in$path][output$eq'ancestors'],model::Structure[id$in$ancestors][ontology_id$eq7]

SectionDataSet

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