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Documentation: Allen Mouse Brain Atlas
DocumentDescription
In Situ Hybridization Processes and procedures used to perform ISH
Informatics Data Processing Design and implementation of the Informatics Data Pipeline (IDP)
Reference Atlas, Version 1 (2008) Overview of the sagittal and coronal Allen Reference Atlases
Reference Atlas, Version 2 (2011) Overview of the sagittal and coronal Allen Reference Atlases
Mouse CCF, Reference Atlas, Version 3 (2015) Overview of the design and implementation of the Allen Mouse Common Coordinate Framework
Fine Structure Annotation Explanation of the informatics methods used to create the fine structure annotations
Acknowledgement of Collaborators Recognition of collaborators and others who provided assistance


Supplemental Data: Allen Mouse Brain Atlas
DocumentDescription
ISH Platform Controls Quality control standards for high-throughput RNA in situ hybridization data generation
Cross Platform ValidationMethods for validating the data
AGEA User GuideOverview of the Anatomic Gene Expression Atlas (AGEA)
Sleep StudyPDF Article of the Sleep Study Results
Mouse Strains StudyPDF Article of the Mouse Strains Study Results
FSA Reports Compilations of neuroanatomic and gene expression characteristics for key brain regions or nuclei
Somatosensory Annotation Technical white paper detailing the methods used to manually annotate the expression patterns of genes in the mouse somatosensory cortex
SomatosensoryAnnotation.xls Spreadsheet containing the somatosensory annotations
Comparison of the Top 1000 Genes The 1000 most requested genes were analyzed as a validation of the ISH data
Comparison of the Top 1000 Genes (Oct 2010) An updated list of the 1000 most requested genes that were analyzed as a validation of the ISH data
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