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Documentation: Allen Mouse Brain Atlas

 

Document

Description

In Situ Hybridization

Processes and procedures used to perform ISH

Informatics Data Processing

Design and implementation of the Informatics Data Pipeline (IDP)

Reference Atlas, Version 1 (2008)

Overview of the sagittal and coronal Allen Reference Atlases

Reference Atlas, Version 2 (2011)

Overview of the sagittal and coronal Allen Reference Atlases

Mouse CCF, Reference Atlas, Version 3 (2015)

Overview of the design and implementation of the Allen Mouse Common Coordinate Framework

Fine Structure Annotation

Explanation of the informatics methods used to create the fine structure annotations

Acknowledgement of Collaborators

Recognition of collaborators and others who provided assistance

Supplemental Data: Allen Mouse Brain Atlas

 

Document

Description

ISH Platform Controls

Quality control standards for high-throughput RNA in situ hybridization data generation

Cross Platform Validation

Methods for validating the data

AGEA User Guide

Overview of the Anatomic Gene Expression Atlas (AGEA)

Sleep Study

PDF Article of the Sleep Study Results

Mouse Strains Study

Mouse Strains Study

FSA Reports

Compilations of neuroanatomic and gene expression characteristics for key brain regions or nuclei

Somatosensory Annotation

Technical white paper detailing the methods used to manually annotate the expression patterns of genes in the mouse somatosensory cortex

SomatosensoryAnnotation.xls

Spreadsheet containing the somatosensory annotations

Comparison of the Top 1000 Genes

The 1000 most requested genes were analyzed as a validation of the ISH data

Comparison of the Top 1000 Genes (Oct 2010)

An updated list of the 1000 most requested genes that were analyzed as a validation of the ISH data

 

 

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