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  1. Conn_Informatics_Data_Processing.pdf

    to enable functional identification of V1 and higher visual areas for more precise targeting of viral injections. The ISI data undergoes processing to enable mapping … of the injection site location(s) was manually done by delineation with closed polygons on each image. This information was used to computationally association
    Mouse Connectivity / … / DocumentationOct 03, 2017
  2. ConnInformaticsDataProcessing.pdf

    to enable functional identification of V1 and higher visual areas for more precise targeting of viral injections. The ISI data undergoes processing to enable mapping … of the injection site location(s) was manually done by delineation with closed polygons on each image. This information was used to computationally association
    Mouse Connectivity / … / DocumentationOct 16, 2017
  3. BDA_vs_AAV.pdf

    and diverse cell types. rAAV and BDA were co- injected into each selected brain region in wild-type mice using a sequential injection method developed to target … , Carlsbad, CA) was diluted in PBS for injections. The rAAV vector used for this study was purchased from the Penn Vector Core (University of Pennsylvania
    Mouse Connectivity / … / DocumentationOct 24, 2014
  4. Connectivity_Overview.pdf

    Atlas Overview brain-map.org page 2 of 15 – Manual delineation of injection sites for all tracer experiments. – Development of a Common Coordinate Framework (CCF … experiments, unlike the high amount of variability that can occur with other methods (e.g. pressure injection) (Harris et al., 2012). It is unclear at this point
    Mouse Connectivity / … / DocumentationMar 08, 2017
  5. ConnOverview.pdf

    relational database incorporating connectivity information from all brain regions and Cre mice. – Manual annotation of the injection sites for all tracer … amount of variability that can occur with other methods (e.g. pressure injection) (Harris et al., 2012). It is unclear at this point if the mechanisms of viral
    Mouse Connectivity / … / DocumentationFeb 22, 2016
  6. InjectionSites_and_StereotaxicCoordinates.pdf

    MARCH 2016 v.9 alleninstitute.org Injection Sites and Stereotaxic Coordinates brain-map.org page 1 of 117 Allen Mouse Brain Connectivity Atlas TECHNICAL WHITE PAPER: INJECTION SITES AND STEREOTAXIC COORDINATES FOR ANTEROGRADE PROJECTOME (BRAIN-WIDE) Table 1. Stereotaxic coordinates used for axonal projection
    Mouse Connectivity / … / DocumentationOct 03, 2017
  7. API

    . For each experiment, the injection site is analyzed and assigned a primary injection structure and, if applicable, a list of secondary injection structures … of the brain, and the injection site and projections are shown in the green channel. No data was collected in the blue channel. From the API, detailed information
    Mouse ConnectivitySep 27, 2018
  8. EphysOverview.pdf

    currents remained stable for a minimum of 1 second prior to each stimulus current injection. The electrophysiology data acquisition stream was divided between … & 2 Square 0.5 ms Subthreshold Description: Current injection of increasing intensity at a rate much slower than the time constant of the neuron. Details
    Allen Cell Types Database / … / DocumentationOct 16, 2017
  9. CellTypes_Ephys_Overview.pdf

    stimulus current injection. The electrophysiology data acquisition stream was divided between sweeps acquired to record required metadata (‘Test Sweeps … Square Noise 1 & 2 Square 0.5 ms Subthreshold Description: Current injection of increasing intensity at a rate much slower than the time constant
    Allen Cell Types Database / … / DocumentationOct 16, 2017
  10. Projection

    and visualized using serial two-photon tomography. Search this dataset using 1)  Source Search , which allows searching by injection site (Filter source … experiments based both on injection site and projection through a structure of interest, or 3)  Spatial Search , a spatial search allows the user to choose either
    Mouse ConnectivityOct 12, 2017