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  1. HBA_Ontology-and-Nomenclature.pdf

    , are divided into a periventricular zone, medial zone and lateral zone. For sampling purposes, well known and well defined areas—such as the paraventricular nucleus … anatomy guide for visualization of anatomic structure relationships within the ontology, as well as in the 2D maps of the human brain. Anatomic drawings were based
    Allen Human Brain Atlas / … / DocumentationOct 17, 2013
  2. Ontology.pdf

    , are divided into a periventricular zone, medial zone, and lateral zone. For sampling purposes, well known and well defined areas—such as the paraventricular … lobes including the insula and the limbic lobe, which contains the cingulate gyrus as well as the hippocampal formation. The subcollosal gyrus—the extension
    Allen Human Brain Atlas / … / Microarray DataOct 22, 2011
  3. Strains_Study.pdf

    (more than 200 brain regions), we applied in situ hybridization to analyze the spatial expression patterns of 49 genes encoding well-known pharmaceutical drug … , without known SNPs) as well as a positive control primer pair for Gapdh, using SYBR Green PCR Master Mix (Roche). Each sample was run in four replicates
    Allen Mouse Brain Atlas / … / DocumentationJun 04, 2013
  4. Sleep_Study.pdf

    clock, and includes the well-known clock gene Per2. Two other GO terms were associated with both time-of-day and sleep/wake regulation. Ubiquitin-mediated … ) Sgk expression in SDC strongly resembles the expression patterns of two well-known oligodendrocyte markers, Mobp and Cnp1. DG, dentate gyrus; CA1, CA3
    Allen Mouse Brain Atlas / … / DocumentationMay 15, 2012
  5. Allen Human Brain Atlas

    structures or donors Heat map and other viewing options, as well as files available for download In situ hybridization … http://human.brain-map.org/mri_viewers/data data for brains used for all microarray and some ISH analyses Multi-planar viewer for structural MRI T1, T2 and DTI files for download
    Allen Human Brain AtlasMay 12, 2014
  6. AGEA.pdf

    mapping 4,376 coronal images series of the ABA. This initial gene set was chosen from the ABA because it contains many of the genes of known neuroscientific interest as well as genes exhibiting marked or unique expression patterns. Each ISH image series is processed through an automated pipeline [1] that detects
  7. AGEA.pdf

    series of the Allen Mouse Brain Atlas. This initial gene set was chosen from the Allen Mouse Brain Atlas because it contains many of the genes of known neuroscientific interest as well as genes exhibiting marked or unique expression patterns. Each ISH image series is processed through an automated pipeline [1
    Allen Mouse Brain Atlas / … / DocumentationMar 06, 2012
  8. Microarray_Analysis.pdf

    be downloaded either as raw Affymetrix .CEL files per each tissue sample or as an archive file containing normalized expression values as well as probe … functions as well as neurodevelopmental disorders linked to disruption of these capacities. The primary data component of the NHP atlas is genome-wide
    NHP / … / DocumentationMar 04, 2014
  9. CellTypesTranscriptomicsOverview.pdf

    . Twelve to 24 8-strips were processed at a time (the equivalent of 1-2 96-well plates). At least 1 control strip was used per amplification set, containing 2 wells without cells (termed ERCC), 2 wells without cells or ERCC (termed NTC), and 4 wells of 10pg of Mouse Whole Brain Total RNA (Zyagen, MR-201). AMPure XP Bead
    Allen Cell Types Database / … / DocumentationJun 06, 2018
  10. Transcriptome_Profiling.pdf

    were excluded.  Postnatal and later stage specimens were excluded if excessive drug or alcohol abuse was reported, if the individual had any known … , and 0.5µl of RNase Inhibitor for a total master mix volume of 6.9 µl per sample. A 6.9 µl aliquot was added to each sample, mixed well, and heated at 25°C for 2
    BrainSpan / … / DocumentationOct 17, 2013