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  1. CellTypes_Ephys_Overview.pdf

    was modified to contain a decreased sodium concentration (substituted with NMDG, Zhao et al., 2011) and elevated magnesium concentrations as well as N-acetyl-L … (substituted with NMDG, Zhao et al., 2011) and elevated magnesium concentrations as well as sodium ascorbate to reduce oxidative damage. ACSF.VIII ACSF.VIII
    Allen Cell Types Database / … / DocumentationOct 16, 2017
  2. ReferenceAtlas_DevMouse.pdf

    by a number of well-characterized gene expression patterns. This approach is also supported by data gathered via descriptive embryology and experimental or transgenic … underpinning the classification framework (the levels of the ontology) basically reflect a simplified sequence of regionalization events known to occur
  3. Reference_Atlas.pdf

    to the ontology. Finalized files (digital cartography) were then databased and made available on the web site. For the adult specimen (An overview of the entire … , identified and colored ontologically. Finalized scalable vector graphic (svg) files were then programmatically rendered for use in the interactive web application
    BrainSpan / … / DocumentationOct 17, 2013
  4. BrainSpan_Reference_Atlas.pdf

    were created, named and colored according to the ontology. Finalized files (digital cartography) were then databased and made available on the web site … and imported into Adobe Illustrator where structure polygons were created, identified and colored ontologically. Finalized scalable vector graphic (svg) files were
    BrainSpan / … / DocumentationMar 03, 2014
  5. API

    and adjusting the tissue bounding boxes, as well as for identifying "dark" artifacts such as bubbles and tears. From the API, detailed information about Genes … ). Three volumetric data files are available for download: atlasVolume
    Allen Mouse Brain AtlasSep 27, 2018
  6. Developmental Transcriptome

    . This search by example facility is also available in the Allen Human Brain Atlas as well as in the Allen Mouse Brain Atlas and in the Allen Developing Mouse … be determined from the counter in the top left corner of the heatmap (see screenshot). Download_DT.JPG Your data will be downloaded as three separate files: 1
    BrainSpanJan 30, 2017
  7. In Situ Hybridization (ISH) Data

    to search for many genes at once. Doing so expands the text box, making it easier to copy and paste a list of genes from a text file or spreadsheet. Comma and semi … is ideal to search for gene expression data when the brain structure or area is known but little is known about genes that may be expressed in that area. To find
    Allen Mouse Brain AtlasJan 30, 2017
  8. Anatomic Gene Expression Atlas (AGEA)

    selected in panel A. This shows numerically how well the target voxel is correlated with the seed. Gene Finder Button: (in Correlation mode only) Click … scale. Download: Click to download the currently selected correlation map as raw flat file with numbers saved as floats. Using Correlation Mode
    Allen Mouse Brain AtlasJan 18, 2017
  9. MouseCCF.pdf

    that were used to indicate borders in the anatomical template as well as confirm those previously delineated. UPDATED AND NEW STRUCTURES The ARA anatomical … and illustrated here as well. The process was completed by a final evaluation of structures in the component 2-D plates as well as the rendered 3-D composition
    Mouse Connectivity / … / DocumentationMay 29, 2015
  10. MouseCCF.pdf

    that were used to indicate borders in the anatomical template as well as confirm those previously delineated. UPDATED AND NEW STRUCTURES The ARA anatomical … and illustrated here as well. The process was completed by a final evaluation of structures in the component 2-D plates as well as the rendered 3-D composition
    Allen Mouse Brain Atlas / … / DocumentationMay 29, 2015