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Example Applications and Source Code
Example RMA Queries for Experimental Metadata
Documentation
Download colorized and labeled atlas images, histological images, SVG atlas graphics and the associated structure ontology. | |
The data model includes entities from molecular biology, anatomic atlases, laboratory artifacts, experiments, and annotations. | |
Download 3-D gene expression summaries re-sampled to a canonical reference space. | |
The SVG download service returns annotations associated with the specified SectionImage as scalable vector graphics. | |
The image download services serves whole and partial two-dimensional images presented on the Allen Brain Atlas Web site. | |
Download a hierarchical XML or JSON document containing each of the Structures in an Ontology. | |
Commonly requested queries for experiment metadata. | |
Image synchronization services use alignment results to find corresponding position between SectionDataSets, the 3-D reference model and structures. | |
Gene expression and projection statistics. | |
RESTful service for searching and retrieving data from the Allen Institute. | |
Search expert annotations of the Developing Mouse Brain Atlas' ISH data. | |
The Structure and Specimen Tree Search services return flat lists of ancestors and/or descendants for a specified structure or specimen. |
For more detailed information, please refer to the Allen Brain Atlas Data Portal .