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In Situ Hybridization

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Processes and procedures used to perform ISH

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Informatics Data Processing

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Design and implementation of the Informatics Data Pipeline (IDP)

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Reference Atlas, Version 1 (2008)

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Overview of the sagittal and coronal Allen Reference Atlases

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Reference Atlas, Version 2 (2011)

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Overview of the sagittal and coronal Allen Reference Atlases

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Mouse CCF, Reference Atlas, Version 3 (2015)

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Overview of the design and implementation of the Allen Mouse Common Coordinate Framework

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Fine Structure Annotation

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Explanation of the informatics methods used to create the fine structure annotations

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Acknowledgement of Collaborators

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Recognition of collaborators and others who provided assistance

Supplemental Data: Allen Mouse Brain Atlas

 

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ISH Platform Controls

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Quality control standards for high-throughput RNA in situ hybridization data generation

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Cross Platform Validation

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Methods for validating the data

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AGEA User Guide

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Overview of the Anatomic Gene Expression Atlas (AGEA)

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Sleep Study

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PDF Article of the Sleep Study Results

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Mouse Strains Study

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Mouse Strains Study

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FSA Reports

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Compilations of neuroanatomic and gene expression characteristics for key brain regions or nuclei

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Somatosensory Annotation

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Technical white paper detailing the methods used to manually annotate the expression patterns of genes in the mouse somatosensory cortex

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SomatosensoryAnnotation.xls

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Spreadsheet containing the somatosensory annotations

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Comparison of the Top 1000 Genes

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The 1000 most requested genes were analyzed as a validation of the ISH data

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Comparison of the Top 1000 Genes (Oct 2010)

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An updated list of the 1000 most requested genes that were analyzed as a validation of the ISH data

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