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   Documentation: Mouse Brain Atlas
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{td}{*}Document{*}{td}{td}{*}Description{*}{td}
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{td}[WholeIn Brain Microarray|^1.pdf]Situ Hybridization {td}{td}OverviewProcesses ofand methodsprocedures forused theto Whole Brain Microarray Surveyperform ISH{td}
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{td}InInformatics SituData HybridizationProcessing {td}{td}OverviewDesign ofand methods for ISH studies{td}
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{td}Gene List{td}{td}A complete list of genes characterized by ISH in adult human brain studiesimplementation of the Informatics Data Pipeline (IDP){td}
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{td}CaseReference Qualification and Donor Profiles Atlases {td}{td}SummaryOverview of casethe qualificationsgittal process and keycoronal informationAllen aboutReference each donorAtlases{td}
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{td}OntologyFine andStructure NomenclatureAnnotation {td}{td}RationalExplanation andof sources for the ontologyinformatics andmethods anatomic nomenclature{td}
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{td}Microarray Platform Selection {td}{td}Technical white paper comparing different microarray platform/service provider options{td}
{used to create the fine structure annotations{td}
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{td}Acknowledgement of Funders {td}{td}Recognition of those who provided financial support{td}
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{td}Acknowledgement of Collaborators {td}{td}Recognition of collaborators and others who provided assistance{td}
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   Supplemental Data: Mouse Brain Atlas
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{td}{*}Document{*}{td}{td}{*}Description{*}{td}
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{td}[WholeOverview Brain Microarray|^1.pdf]of Controls {td}{td}Overview of methodsthe forgeneration of the WholeAllen Mouse Brain Microarray SurveyAtlas{td}
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{td}InISH SituPlatform HybridizationControls {td}{td}OverviewQuality ofcontrol methodsstandards for ISH studieshigh-throughput RNA in situ hybridization data generation{td}
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{td}GeneCross ListPlatform Validation{td}{td}AMethods completefor listvalidating of genes characterized by ISH in adult human brain studiesthe data{td}
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{td}AGEA User Guide{td}{td}Overview of the Anatomic Gene Expression Atlas (AGEA){td}
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{td}CaseFSA Qualification and Donor Profiles Reports {td}{td}SummaryCompilations of caseneuroanatomic qualificationand processgene andexpression characteristics for key informationbrain aboutregions eachor donornuclei{td}
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{td}OntologySomatosensory andAnnotation Nomenclature {td}{td}RationalTechnical andwhite sourcespaper fordetailing the ontologymethods andused anatomic nomenclatureto manually annotate the expression patterns of genes in the mouse somatosensory cortex{td}
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{td}Microarray Platform Selection SomatosensoryAnnotation.xls {td}{td}TechnicalSpreadsheet whitecontaining paperthe comparing different microarray platform/service provider optionssomatosensory annotations{td}
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{td}AcknowledgementComparison of Funders the Top 1000 Genes {td}{td}RecognitionThe of1000 thosemost whorequested providedgenes financial supportwere analyzed as a validation of the ISH data{td}
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{td}AcknowledgementComparison of Collaborators the Top 1000 Genes (Oct 2010) {td}{td}RecognitionAn updated list of collaboratorsthe and1000 othersmost whorequested provided assistancegenes that were analyzed as a validation of the ISH data{td}
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