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From the API, detailed information about Genes, Probes, SectionDataSets and SectionImages can be obtained using RMA queries.

Examples

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StructureUnionize data is used in the web application to generate an expression summary heatmap for a set of coarse structures over the 7 main developmental timepoints assayed.

Example:

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Figure: Screenshot of top returns of a correlation search for genes with similar expression as Neurod1 within the telencephalic telencephalic vesicle at age P4.

Example:

Figure: Screenshot of the top 2 returns (Sowaha, Prox1) of a correlation search for genes with similar expression as Neurod1 within the telencephalic vesicle at ages (left to right) P4, P14, P28.

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  • Correlation search for genes with similar expression to Nr5a1 over the whole neural plate (NP) and across all 7 ages 

    No Format
    http://api.brain-map.org/api/v2/data/query.xml?criteria=service::dev_mouse_correlation[row$eq26171][structures$eq'NP']

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*Note:* the structural hierarchy associated with the manual annotation differs from the Ontology used for informatics processing of the ISH data.

Examples:

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    Download manual annotation for gene Tcf7l2 at E11.5 

    No Format
    http://api.brain-map.org/api/v2/data/query.xml?criteria=model::ManualAnnotation,rma::criteria,[section_data_set_id$eq100045897],
    rma::include,structure,rma::options[order$eq'structures.graph_order$asc']
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    Search for E13.5 SectionDataSets with high intensity, regional expression in the diencephalon 

    No Format
    http://api.brain-map.org/api/v2/annotated_section_data_sets.xml?structures=112765096
    &intensity_values='High'&pattern_values='Regional'&age_names='E13.5'
  • Download the structure ontology used for manual annotation

    No Format
    http://api.brain-map.org/api/v2/structure_graph_download/112755225.json

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