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Overview

The Data Set

The Allen Human Brain Atlas consists of two primary sources of gene expression data: microarray numerical value data and in situ hybridization (ISH) image data.

For complete details please see the Microarray Platform Selection, Whole Brain Microarray and In SituHybridization white papers on our Documentation page.

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Supported Platforms

This application has been tested with the following configurations. You may notice irregularities with software that has not been tested. There are known issues when viewing heat map data using unsupported browsers.

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Microarray Data

The Data Set

The website offers three types of searches to allow a user to: (1) limit the visualization to a subset of probes (or genes) of interest (Gene Search); (2) use a 'seed' gene to find other genes with similar expression patterns (Find Correlates); and (3) compare expression between different anatomic regions (Differential Search).

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