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Documentation:

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Allen Mouse Brain Connectivity Atlas

 

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Description

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Overview

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Technical whitepaper describing the Projection Mapping studies

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Retinal Projectome

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Technical whitepaper describing the Retinal Projectome Mapping studies

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Informatics Data Processing

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Design and implementation of the Connectivity Informatics Data Pipeline (IDP)

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BDA vs. rAAV

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Technical whitepaper describing the comparative studies between BDA and rAAV tracing methods

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Injection Sites and Stereotaxic Coordinates

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Tables listing the sites of injection of the tracers and their stereotaxic coordinates for the brain-wide anterograde projectome

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Reference Dataset

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Technical whitepaper describing the generation of the reference datasets

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Mouse CCF, Reference Atlas, Version 3 (2016)

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Overview of the design and implementation of the Allen Mouse Common Coordinate Framework

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Transgenic Characterization

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Technical whitepaper describing the various characterization studies

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Resources

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A complete list of driver and reporter mice and viruses used in the Allen Mouse Brain Connectivity Atlas projectome data, Transgenic Characterization, and Allen Cell Types Database

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Acknowledgements

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Recognition of collaborators and others who provided assistance

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