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{use-layout:documentation|latch=false} {section} {column}{column} {column:width=75%} {align:left} {html} <table border="1" cellpadding="5" width="800"> <th align="center" style="color:white;background-color:#31506C"> Documentation: Mouse Brain Atlas </th> <tr><td> {html} {table:bgcolor=white|cellpadding=5|cellspacing=5|frame=none|rules=none} {tr} {td}{*}Document{*}{td}{td}{*}Description{*}{td} {tr} {tr} {td}In Situ Hybridization {td}{td}Processes and procedures used to perform ISH{td} {tr} {tr} {td}Informatics Data Processing {td}{td}Design and implementation of the Informatics Data Pipeline (IDP){td} {tr} {tr} {td}Reference Atlases {td}{td}Overview of the sagittal and coronal Allen Reference Atlases{td} {tr} {tr} {td}[Fine Structure Annotation|http://community.brain-map.org/confluence/display/DataAnno/Home] {td}{td}Explanation of the informatics methods used to create the fine structure annotations{td} {tr} {tr} {td}[Acknowledgement of Collaborators|#Collaborators^Collaborators.pdf] {td}{td}Recognition of collaborators and others who provided assistance{td} {tr} {table} {html} </td></tr> </table> {html} {align} \\ {align:left} {html} <table border="1" cellpadding="5" width="800"> <th align="center" style="color:white;background-color:#31506C"> Supplemental Data: Mouse Brain Atlas </th> <tr><td> {html} {table:bgcolor=white|cellpadding=5|cellspacing=5|frame=none|rules=none} {tr} {td}{*}Document{*}{td}{td}{*}Description{*}{td} {tr} {tr} {td}Overview of Controls {td}{td}Overview of the generation of the Allen Mouse Brain Atlas{td} {tr} {tr} {td}ISH Platform Controls {td}{td}Quality control standards for high-throughput RNA in situ hybridization data generation{td} {tr} {tr} {td}Cross Platform Validation{td}{td}Methods for validating the data{td} {tr} {tr} {td}AGEA User Guide{td}{td}Overview of the Anatomic Gene Expression Atlas (AGEA){td} {tr} {tr} {td}[FSA Reports|http://community.brain-map.org/confluence/display/DataAnno/Home] {td}{td}Compilations of neuroanatomic and gene expression characteristics for key brain regions or nuclei{td} {tr} {tr} {td}Somatosensory Annotation {td}{td}Technical white paper detailing the methods used to manually annotate the expression patterns of genes in the mouse somatosensory cortex{td} {tr} {tr} {td}SomatosensoryAnnotation.xls {td}{td}Spreadsheet containing the somatosensory annotations{td} {tr} {tr} {td}Comparison of the Top 1000 Genes {td}{td}The 1000 most requested genes were analyzed as a validation of the ISH data{td} {tr} {tr} {td}Comparison of the Top 1000 Genes (Oct 2010) {td}{td}An updated list of the 1000 most requested genes that were analyzed as a validation of the ISH data{td} {tr} {table} {html} </td></tr> </table> {html} {align} {column} {column}{column} {section} |
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