Help

About Online Help Supported Platforms Data Portal API Reference Atlas Viewer Brain Explorer Mouse Brain Developing Mouse Brain Human Brain Developing Human Brain Mouse Spinal Cord Glioblastoma Non-Human Primate Mouse Connectivity
Cell Types Aging, Dementia and TBI Allen Brain Observatory

Versions Compared

Old Version 10

changes.mady.by.user Unknown User (terrig)

Saved on

compared with

New Version 11

changes.mady.by.user Unknown User (terrig)

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.
Section
Column
width800px

Projection Dataset

Searching

This dataset allows you to browse an image database of axonal projections labeled by viral (rAAV) tracers and visualized using serial two-photon tomography. To search this dataset, browse and select from a list of primary injections sites (approximately 27 sites for the November 2011 release). Selecting an injection site will return a list of experiments.

This list outlines the experiment ID, Structure Name, Mouse Strain, Sex, and Age. Clicking on an experiment ID will launch a contact sheet viewer.

Contact Sheet Viewer

Image Added

Clicking on individual images on the contact sheet will launch a High Resolution Image Viewer. The viral tracer is visualized in the green channel, while background auto-fluorescence, seen in the red channel, is useful to provide anatomical context. No information was collected in the blue channel.

Clicking on an experiment ID will launch a contact sheet viewer.

Image Removed

Clicking on individual images on the contact sheet will launch a High Resolution Image Viewer.Within the Image Viewer, the contrast and brightness can be adjusted and the individual color channels can be turned on and off by moving both range sliders in a channel to zero.

Column