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Reference Atlas Viewer Brain Explorer Mouse Brain Developing Mouse Brain Human Brain Developing Human Brain Mouse Spinal Cord Glioblastoma Non-Human Primate Mouse Connectivity Cell Types Aging, Dementia and TBI Allen Brain Observatory

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Allen

Mouse

Brain Atlas API

This is the online help for the ALLEN Mouse Brain Atlas API.

The Allen Mouse Brain Atlas is a genome-wide, high-resolution atlas of gene expression throughout the adult mouse brain.

Key features:
In situ hybridization data
  • Genome-wide coverage
  • Comprehensive anatomic coverage
  • Microscopic resolution down to the cellular level
  • NeuroBlast search for genes with similar spatial expression patterns
AGEA tool for exploring transcriptome-based brain architecture and gene discovery
Brain Explorer® 3-D viewer
Anatomic reference atlases
  • Coronal and sagittal plates
  • High-resolution Nissl images
  • Structure ontology
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