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Allen Brain Atlas API

(icon) Image Added The Allen Mouse Brain Atlas provides genome-wide in situ hybridization (ISH) data for approximately 20,000 genes in adult mice. Each data set is processed through an informatics analysis pipeline to obtain spatially mapped quantified expression information.

From the API, you can:


Image Added Download images
(icon) Download quantified expression values by structure


Image Added Download quantified expression values as 3-D grids
(icon) Query the differential and correlative search services
(icon) Query the image synchronization service

Experimental Metadata

Experimental data from the Atlas is associated with the "Mouse Brain" Product.