Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

The output of the source search is a xml list of objects. Each object represents one experiment and contains information about the experiment including its unique identifier, the primary injection structure, list of any secondary injection structures, injection coordinates, injection volume and transgenic line name.

...

The output of the target search is a xml list of objects. Each object represents one experiment and contains information about the experiment including its unique identifier, the primary injection structure, list of any secondary injection structures, injection coordinates, injection volume and transgenic line name. Additionally, the total signal volume and number of voxels spanned by the target structure(s) is also reported.

...

To perform a Spatial Search, a user selects a target location within the 3D reference space. The service returns a rank list of experiments by signal density in the target location and with density greater than 0.1. The search results can also be filtered by a list of source structures and/or list of transgenic lines

See the connected service page for definitions of service::mouse_connectivity_target_spatial parameters.

Example:

  • Spatial search for experiments with projection signal in a target location in VM (ventral medial nucleus of the thalamus)
    Code Block
    
    http://api.brain-map.org/api/v2/data/query.xml?criteria=
    service::mouse_connectivity_target_spatial[seed_point$eq6900,5050,6450]
    

The output of the target search is a xml list of objects. Each object represents one experiment and contains information about the experiment including its unique identifier, the primary injection in the isocortexstructure, list of any secondary injection structures, injection coordinates, injection volume and transgenic line name. Additionally, the path from the target location to the injection is listed along with signal density at each node.

Figure: Screenshot of spatial search results in the web application for experiments with projection in target location within VM (ventral medial nucleus of the thalamus) and injection in the isocortex. Each line in the 3D map is the computationally generated path from the target location to injection of one experiment.

...