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See the connected service page for definitions of service::mouse_connectivity_injection_structure parameters.

The output of the source search is a xml list of objects. Each object represents one experiment and contains information about the experiment including its unique identifier, the primary injection structure, list of any secondary injection structures, injection coordinates, injection volume and transgenic line name.

Examples:

  • Source search for experiments with injection in the isocortex
    Code Block
    http://api.brain-map.org/api/v2/data/query.xml?criteria=
    service::mouse_connectivity_injection_structure[injection_domain$eqIsocortex]
    
  • Source search for experiments performed on wild-type specimens and injection in the isocortex
    Code Block
    http://api.brain-map.org/api/v2/data/query.xml?criteria=
    service::mouse_connectivity_injection_structure[injection_domain$eqIsocortex][transgenic_lines$eq0]
    
  • Source search for experiments performed on Syt6-Cre_KI148 cre-line with injection in the isocortex
    Code Block
    http://api.brain-map.org/api/v2/data/query.xml?criteria=
    service::mouse_connectivity_injection_structure[injection_domain$eqIsocortex][transgenic_lines$eq'Syt6-Cre_KI148']
    

The output of the source search is a xml list of objects. Each object represents one experiment and contains information about the experiment including its unique identifier, the primary injection structure, list of any secondary injection structures, injection coordinates, injection volume and transgenic line name.

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See the connected service page for definitions of service::mouse_connectivity_injection_structure parameters.

The output of the target search is a xml list of objects. Each object represents one experiment and contains information about the experiment including its unique identifier, the primary injection structure, list of any secondary injection structures, injection coordinates, injection volume and transgenic line name. Additionally, the total signal volume and number of voxels spanned by the target structure(s) is also reported.

Example:

  • Target search for experiments with projection signal in the target structure LGd (dorsal part of the lateral geniculate complex) and injection in the isocortex
    Code Block
    http://api.brain-map.org/api/v2/data/query.xml?criteria=
    service::mouse_connectivity_injection_structure[injection_domain$eqIsocortex][target_domain$eqLGd]
    

The output of the target search is a xml list of objects. Each object represents one experiment and contains information about the experiment including its unique identifier, the primary injection structure, list of any secondary injection structures, injection coordinates, injection volume and transgenic line name. Additionally, the total signal volume and number of voxels spanned by the target structure(s) is also reported.

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See the connected service page for definitions of service::mouse_connectivity_target_spatial parameters.

The output of the target search is a xml list of objects. Each object represents one experiment and contains information about the experiment including its unique identifier, the primary injection structure, list of any secondary injection structures, injection coordinates, injection volume and transgenic line name. Additionally, the path from the target location to the injection is listed along with signal density at each node.

Example:

  • Spatial search for experiments with projection signal in a target location in VM (ventral medial nucleus of the thalamus)
    Code Block
    http://api.brain-map.org/api/v2/data/query.xml?criteria=
    service::mouse_connectivity_target_spatial[seed_point$eq6900,5050,6450]
    

The output of the target search is a xml list of objects. Each object represents one experiment and contains information about the experiment including its unique identifier, the primary injection structure, list of any secondary injection structures, injection coordinates, injection volume and transgenic line name. Additionally, the path from the target location to the injection is listed along with signal density at each node.

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Figure: Screenshot of spatial search results in the web application for experiments with projection in target location within VM (ventral medial nucleus of the thalamus). Each line in the 3D map is the computationally generated path from the target location to injection of one experiment.

See spatial target search and computational path visualization example applications for more detailed example use cases of the spatial search service.

Injection Coordinate Search

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