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Atlas ID

 

Atlas Name

Image Type

Ontology

StructureGraph ID

GraphicGroupLabels

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="74f4adf636694dc0-e8c41972-44eb4e5b-b123b834-172bf98729dd2a649e89e3f7"><ac:plain-text-body><![CDATA[

[1

http://atlas.brain-map.org/atlas?atlas=1]

!P56_Coronal.png

width=32!

"Mouse, P56,  Coronal"

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28,159226751]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f105ec99a7d50950-e62733d5-4a254492-9ea09700-cd8132ade37e37078881e312"><ac:plain-text-body><![CDATA[

[2

http://atlas.brain-map.org/atlas?atlas=2]

!P56_Sagittal.png

width=32!

"Mouse, P56, Sagittal"

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28,159226751]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="54753765f0358af6-89b22c78-475e4b7b-9b16b65c-19a5455abb41718566fa66ce"><ac:plain-text-body><![CDATA[

[181276165

http://atlas.brain-map.org/atlas?atlas=181276165]

!DevMouse_P56.jpg

width=32!

"Developing Mouse, P56"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,167675952]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6ed6ad7254685f5f-b4ce9d23-46ef43dd-87ecb3fc-5dad5a95fc0e627f0c75c71a"><ac:plain-text-body><![CDATA[

[181276164

http://atlas.brain-map.org/atlas?atlas=181276164]

!DevMouse_P14.jpg

width=32!

"Developing Mouse, P14"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1f88906afe8617aa-69d93391-45704f8c-a82cad61-c671d03b5021ff67cd238cb1"><ac:plain-text-body><![CDATA[

[181276162

http://atlas.brain-map.org/atlas?atlas=181276162]

!DevMouse_P4.jpg

width=32!

"Developing Mouse, P4"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="aab940a85e608912-fa5f31de-42b34adc-a31d87dc-2afb65f53820522bab7ec258"><ac:plain-text-body><![CDATA[

[181276160

http://atlas.brain-map.org/atlas?atlas=181276160]

!DevMouse_E18pt5.jpg

width=32!

"Developing Mouse, E18.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="cc18e04cc2c79b35-6919611d-4c0546fb-a172a796-87d02a0f1a3dc2a3de1a65b9"><ac:plain-text-body><![CDATA[

[181276151

http://atlas.brain-map.org/atlas?atlas=181276151]

!DevMouse_E15pt5.jpg

width=32!

"Developing Mouse, E15.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ead770f769758c53-5fa90a45-425140f8-b9a3b636-ebadbfca361c650fa1997dd8"><ac:plain-text-body><![CDATA[

[181276130

http://atlas.brain-map.org/atlas?atlas=181276130]

!DevMouse_E13pt5.jpg

width=32!

"Developing Mouse, E13.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c45aa81d0bb1ac97-a6247da1-414e415e-92189c5f-a988af601e334d598f87f940"><ac:plain-text-body><![CDATA[

[181275741

http://atlas.brain-map.org/atlas?atlas=181275741]

!DevMouse_E11pt5.jpg

width=32!

"Developing Mouse, E11.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,126768961]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d1943529a1e0ed7a-db49b466-477d4450-8e82b6df-6879c26ceb835e3629a9dcf4"><ac:plain-text-body><![CDATA[

[138322605

http://atlas.brain-map.org/atlas?atlas=138322605]

!cortex_gyral.png

width=25!

"Human, 34 years, Cortex - Gyral"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31,113753815,113753816,141667008]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0b45f530e88c124a-37381bf2-4f0249cb-bb47959f-33be971ed0df48f607b03602"><ac:plain-text-body><![CDATA[

[265297126

http://atlas.brain-map.org/atlas?atlas=265297126]

!cortex_brodmann.png

width=25!

"Human, 34 years, Cortex - Mod. Brodmann"

"Atlas - Developing Human Brodmann"

"Developing Human Brain Atlas"

16

[31,113753816,141667008,265297118]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="31c3fcbed011145c-7fd131ea-48f34bc0-9236931f-55a61247e8a1281fe07f448e"><ac:plain-text-body><![CDATA[

[3

http://atlas.brain-map.org/atlas?atlas=3]

!Human_21pcw.jpg

width=25!

"Human, 21 pcw"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31,113753816,141667008]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1bd7a870955efcb0-155856bf-42e640c7-95699caf-f87ae7470edf4f502dfbd252"><ac:plain-text-body><![CDATA[

[138322603

http://atlas.brain-map.org/atlas?atlas=138322603]

!Human_15pcw.jpg

width=20!

"Human, 15 pcw"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31,141667008]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="efc4308b60021c4b-8e73cc1c-476642ed-8182b97f-8273dc050a72c56ec59bddd7"><ac:plain-text-body><![CDATA[

[265297125

http://atlas.brain-map.org/atlas?atlas=265297125]

!hba_guide.png

width=25!

"Human Brain Atlas Guide "

"Atlas - Human"

"Human Brain Atlas"

10

[265297119,266932194,266932196,266932197]

]]></ac:plain-text-body></ac:structured-macro>

...

  • "Atlas - Adult Mouse" images for the "Mouse, P56  Coronal" atlas
    Code Blocknoformat
    http://api.brain-map.org/api/v2/data/query.xml?criteria=model::AtlasImage,
    rma::criteria,
    [annotated$eqtrue],
    atlas_data_set(atlases[id$eq1]),
    alternate_images[image_type$eq'Atlas+-+Adult+Mouse'],
    rma::options[order$eq'sub_images.section_number'][num_rows$eqall]
    
  • "Atlas - Developing Human" images for the "Human, 34 years, Cortex - Gyral" atlas
    Code Blocknoformat
    http://api.brain-map.org/api/v2/data/query.xml?criteria=model::AtlasImage,
    rma::criteria,
    [annotated$eqtrue],
    atlas_data_set(atlases[id$eq138322605]),
    alternate_images[image_type$eq'Atlas+-+Developing+Human'],
    rma::options[order$eq'sub_images.section_number'][num_rows$eqall]
    

...

  • Download colorized and labeled image for one "Mouse, P56  Coronal" atlas image
    Code Blocknoformat
    http://api.brain-map.org/api/v2/atlas_image_download/100960248?downsample=4&annotation=true
    
  • View the vector graphics for one "Human, 34 years, Cortex - Gyral" atlas image
    Code Blocknoformat
    http://api.brain-map.org/api/v2/svg/112360908?groups=31,113753815,113753816,141667008&downsample=8
    
  • Download the vector graphics for one "Human, 34 years, Cortex - Gyral" atlas image
    Code Blocknoformat
    http://api.brain-map.org/api/v2/svg_download/112360908?groups=31,113753815,113753816,141667008&downsample=8
    

...

  • Download the "Human Brain Atlas" ontology as a CSV file
    Code Blocknoformat
    http://api.brain-map.org/api/v2/data/query.csv?criteria=model::Structure,
    rma::criteria,[ontology_id$eq7],
    rma::options[order$eq%27structures.graph_order%27][num_rows$eqall]
    
  • Download the "Mouse Brain Atlas" ontology as a hierarchically structured json file
    Code Blocknoformat
    http://api.brain-map.org/api/v2/structure_graph_download/1.json
    
  • Download the "Developing Human Brain Atlas" ontology as a hierarchically structured json file
    Code Blocknoformat
    http://api.brain-map.org/api/v2/structure_graph_download/16.json