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Please note that multiple line example RMA queries on this page represent spaces enclosed in quotation marks with the "+" character to make the examples compatible with some browsers.

ALLEN BRAIN ATLAS API

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Status

Date Updated

No Format
http://api.brain-map.org/api/v2/status/query.xml

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Mouse Brain

All Mouse Brain ISH experiments

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No Format
http://api.brain-map.org/api/v2/data/query.csv?criteria=
model::ProjectionStructureUnionize,
rma::criteria,[is_injection$eq'f'],hemisphere,structure,section_data_set[id$eq183282970](specimen(stereotaxic_injections(primary_injection_structure,stereotaxic_injection_coordinates))),rma::include,section_data_set(specimen(stereotaxic_injections(primary_injection_structure))),
rma::options[tabular$eq'distinct+specimens.name+as+specimen_name,stereotaxic_injection_coordinates.coordinates_ap,stereotaxic_injection_coordinates.coordinates_dv,stereotaxic_injection_coordinates.coordinates_ml,data_sets.id+as+data_set_id,stereotaxic_injections.primary_injection_structure_id,structures.acronym+as+target_structure,hemispheres.symbol+as+hemisphere,projection_structure_unionizes.is_injection,projection_structure_unionizes.sum_pixels,projection_structure_unionizes.sum_projection_pixels,projection_structure_unionizes.sum_pixel_intensity,projection_structure_unionizes.sum_projection_pixel_intensity,projection_structure_unionizes.projection_density,projection_structure_unionizes.projection_intensity,projection_structure_unionizes.projection_energy,projection_structure_unionizes.volume,projection_structure_unionizes.projection_volume,projection_structure_unionizes.normalized_projection_volume,projection_structure_unionizes.max_voxel_density,projection_structure_unionizes.max_voxel_x,projection_structure_unionizes.max_voxel_y,projection_structure_unionizes.max_voxel_z'][start_row$eq0][num_rows$eq3000]

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Developing Mouse Brain

All Developing Mouse Brain ISH experiments with images

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No Format
http://api.brain-map.org/api/v2/data/query.xml?criteria=
model::SectionDataSet,
rma::criteria,[failed$eq'false'],
rma::include,genes[acronym$eq'Gad1'],section_images,specimen(donor(age[name$eq'P28']))

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Sleep Study

Sleep Study ISH experiments with images, including the experimental condition:

No Format
http://api.brain-map.org/api/v2/data/query.xml?criteria=
model::SectionDataSet,
rma::criteria,[failed$eqfalse],products[abbreviation$eq'Sleep'],treatments[name$eq'ISH'],
rma::include,probes(gene),plane_of_section,specimen(donor(disease_categories,medical_conditions)),section_images
&num_rows=10

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Human Brain

Human Brain ISH Autism Study experiments with images, including the donor's conditions

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No Format
http://api.brain-map.org/api/v2/data/query.xml?criteria=
model::MicroarraySlide,
rma::criteria,microarray_data_sets[failed$eqfalse](products[abbreviation$eq'HumanMA']),
rma::include,structures,well_known_files,microarray_data_sets(specimen(donor(age)))

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Developing Human Brain

Developing Human Brain ISH experiments with images

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