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IMAGE SYNCHRONIZATION

Table of Contents
minLevel2
maxLevel3
stylenone
classtoc-style

The following set of image synchronization services uses the image alignment results from the Informatics Data Processing Pipeline. Note: all locations on SectionImages are reported in pixel coordinates and all locations in 3-D ReferenceSpaces are reported in microns.

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ATLAS

For a specified Atlas, find the closest annotated SectionImage and (x,y) location as defined by a seed SectionImage and seed (x,y) location.

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section_image_id

Closest annotated SectionImage to the seed SectionImage and pixel location.

section_number

Section number of the closest SectionImage.

x

Closest x pixel coordinate on the closest SectionImage.

y

Closest y pixel coordinate on the closest SectionImage.

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IMAGE

For a list of target SectionDataSets, find the closest SectionImage and (x,y) location as defined by a seed SectionImage and seed (x,y) pixel location.

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section_image_id

Closest SectionImage to the seed SectionImage and pixel location.

section_number

Section number of the closest SectionImage.

x

Closest x pixel coordinate on the closest SectionImage.

y

Closest y pixel coordinate on the closest SectionImage.

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IMAGE 2-D

For a list of target SectionImages, find the closest (x,y) location as defined by a seed SectionImage and seed (x,y) location.

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x

Closest x pixel coordinate to the seed location.

y

Closest y pixel coordinate to the seed location.

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REFERENCE-

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IMAGE

For a list of target SectionDataSets, find the closest SectionImage and (x,y) location as defined by a (x,y,z) location in a specified ReferenceSpace.

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section_image_id

Closest SectionImage to the seed ReferenceSpace and location.

section_number

Section number of the closest SectionImage.

x

Closest x pixel coordinate to the seed location.

y

Closest y pixel coordinate to the closest SectionImage.

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REFERENCE

For a specified SectionImage and (x,y) location, return the (x,y,z) location in the ReferenceSpace of the associated SectionDataSet.

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x

x coordinate (in microns) in the associated ReferenceSpace.

y

y coordinate (in microns) in the associated ReferenceSpace.

z

z coordinate (in microns) in the associated ReferenceSpace.

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STRUCTURE-

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IMAGE

For a list of target structures, find the closest SectionImage and (x,y) location as defined by the centroid of each Structure.

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