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Allen Brain Atlas API

ALLEN BRAIN ATLAS API

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The primary data of the Allen Mouse Brain Connectivity Atlas consists of high-resolution images of axonal projections targeting different anatomic regions or various cell types using Cre-dependent specimens. Each data set is processed through an informatics data analysis pipeline to obtain spatially mapped quantified projection information.

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This document provides a brief overview of the data, database organization and example queries. API database object names are in camel case. See the main API documentation for more information on data models and query syntax.

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EXPERIMENTAL OVERVIEW AND METADATA

Experimental data from the Atlas is associated with the "Mouse Connectivity Projection" Product.

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INFORMATICS DATA PROCESSING

The informatics data processing pipeline produces results that enable navigation, analysis and visualization of the data. The pipeline consists of the following components:

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