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Documentation: Allen Cell Types Database

 


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Description


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Overview


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Overview of methods for the Cell Types database




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Transcriptomics Overview


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Description of methods for single cell RNA isolation and sequence analysis



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Electrophysiology Overview


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Description of methods for tissue processing, electrophysiology data acquisition, and analysis of intrinsic properties



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Morphology and Histology Overview


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Description of methods for histological staining, image acquisition, 3D reconstruction and structure-based categorization



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Neuronal Models: GLIF


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Description of the generalized leaky integrate-and-fire single-neuron models



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Neuronal Models: Biophysical - Perisomatic


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Description of the biophysically realistic, single-neuron models with passive dendrites and active soma (perisomatic)



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Neuronal Models: Biophysical - All Active


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Description of the biophysically realistic, single-neuron models with active conductances everywhere (all-active)



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Mouse CCF, Reference Atlas, Version 3 (2017)


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Overview of the design and implementation of the Allen Mouse Common Coordinate Framework



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Acknowledgement of Collaborators


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Recognition of collaborators and others who provided assistance



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Case Qualification and Donors


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Summary of tissue donor qualification process and information about each donor