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Documentation: Allen Mouse Brain Atlas

 

Document

Description

In Situ Hybridization

Processes and procedures used to perform ISH

Informatics Data Processing

Design and implementation of the Informatics Data Pipeline (IDP)

Reference Atlas, Version 1 (2008)

Overview of the sagittal and coronal Allen Reference Atlases

Reference Atlas, Version 2 (2011)

Overview of the sagittal and coronal Allen Reference Atlases

Mouse CCF, Reference Atlas, Version 3 (2015)

Overview of the design and implementation of the Allen Mouse Common Coordinate Framework

Fine Structure Annotation

Explanation of the informatics methods used to create the fine structure annotations

Acknowledgement of Collaborators

Recognition of collaborators and others who provided assistance

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Unknown macro: {td} Document
Unknown macro: {td} Description
Unknown macro: {tr}
Unknown macro: {td} In Situ Hybridization
Unknown macro: {td} Processes and procedures used to perform ISH
Unknown macro: {tr}
Unknown macro: {td} Informatics Data Processing
Unknown macro: {td} Design and implementation of the Informatics Data Pipeline (IDP)
Unknown macro: {tr}
Unknown macro: {td} Overview of the sagittal and coronal Allen Reference Atlases
Unknown macro: {tr}
Unknown macro: {td} Overview of the sagittal and coronal Allen Reference Atlases
Unknown macro: {tr}
Unknown macro: {td} Overview of the design and implementation of the Allen Mouse Common Coordinate Framework
Unknown macro: {tr}
Unknown macro: {td} Fine Structure Annotation
Unknown macro: {td} Explanation of the informatics methods used to create the fine structure annotations
Unknown macro: {tr}
Unknown macro: {td} Recognition of collaborators and others who provided assistance
 

 

 

Supplemental Data: Allen Mouse Brain Atlas

 

 

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Unknown macro: {td} Document
Unknown macro: {td} Description
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Unknown macro: {td} ISH Platform Controls
Unknown macro: {td} Quality control standards for high-throughput RNA in situ hybridization data generation
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Unknown macro: {td} Cross Platform Validation
Unknown macro: {td} Methods for validating the data
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Unknown macro: {td} AGEA User Guide
Unknown macro: {td} Overview of the Anatomic Gene Expression Atlas (AGEA)
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Unknown macro: {td} Sleep Study
Unknown macro: {td} PDF Article of the Sleep Study Results
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Unknown macro: {td} Mouse Strains Study
Unknown macro: {td} PDF Article of the Mouse Strains Study Results
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Unknown macro: {td} FSA Reports
Unknown macro: {td} Compilations of neuroanatomic and gene expression characteristics for key brain regions or nuclei
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Unknown macro: {td} Somatosensory Annotation
Unknown macro: {td} Technical white paper detailing the methods used to manually annotate the expression patterns of genes in the mouse somatosensory cortex
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Unknown macro: {td} SomatosensoryAnnotation.xls
Unknown macro: {td} Spreadsheet containing the somatosensory annotations
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Unknown macro: {td} The 1000 most requested genes were analyzed as a validation of the ISH data
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Unknown macro: {td} An updated list of the 1000 most requested genes that were analyzed as a validation of the ISH data
 

 

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