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Documentation: Allen Cell Types Database

 

Document

Description

Overview

Overview of methods for the Cell Types database

Transcriptomics Overview

Description of methods for single cell RNA isolation and sequence analysis

Electrophysiology Overview

Description of methods for tissue processing, electrophysiology data acquisition, and analysis of intrinsic properties

Morphology Overview

Description of methods for histological staining, image acquisition, 3D reconstruction and structure-based categorization

Neuronal Models: GLIF

Description of the generalized leaky integrate-and-fire single-neuron models

Neuronal Models: Biophysical - Perisomatic

Description of the biophysically realistic, single-neuron models with passive dendrites and active soma (perisomatic)

Neuronal Models: Biophysical - All Active

Description of the biophysically realistic, single-neuron models with active conductances everywhere (all-active)

Mouse CCF, Reference Atlas, Version 3 (2017)

Overview of the design and implementation of the Allen Mouse Common Coordinate Framework

Acknowledgement of Collaborators

Recognition of collaborators and others who provided assistance

Case Qualification and Donors

Summary of tissue donor qualification process and information about each donor.

 

 

 

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