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Allen Mouse Brain Atlas

This is the online help for the ALLEN Mouse Brain Atlas web application.

The Allen Mouse Brain Atlas is a genome-wide, high-resolution atlas of gene expression throughout the adult mouse brain.

Key features:
  1. In situ hybridization data
    • Genome-wide coverage
    • Comprehensive anatomic coverage
    • Microscopic resolution down to the cellular level
  2. NeuroBlast search for genes with similar spatial expression patterns
  3. AGEA tool for exploring transcriptome-based brain architecture and gene discovery
  4. Brain Explorer® 3-D viewer
  5. Anatomic reference atlases
    • Coronal and sagittal plates
    • High-resolution Nissl images
    • Structure ontology
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