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Atlas Drawings and Ontologies

A set of high resolution digital reference atlases have been created to provide neuroanatomical context to the in situ hybridization and axonal projection data.

From the API, you can:

  • Download the underlying high resolution histological images
  • Download the colorized and label atlas images
  • Download atlas drawings in SVG (scalable vector graphics) format
  • Download the associated structural ontology

The following atlases are available through the API

Atlas ID

Atlas Name

 

Image Type

Ontology

StructureGraph ID

GraphicGroupLabels

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0472a6e1-2f78-4ac5-986e-ed0055262b40"><ac:plain-text-body><![CDATA[

1

"Mouse, P56  Coronal"

 

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28,159226751]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ab87bc65-4e9d-4c61-b560-523d4d7d543c"><ac:plain-text-body><![CDATA[

2

"Mouse, P56 Sagittal"

 

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1abdfe19-d672-467b-bdea-209897a4403a"><ac:plain-text-body><![CDATA[

181276165

"Developing Mouse, P56"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e32fd6b5-6f01-42db-b59d-2ee2667deeeb"><ac:plain-text-body><![CDATA[

181276164

"Developing Mouse, P14"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,167675952]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a2f1b68a-fd27-4f4f-8e52-ea0a477ad390"><ac:plain-text-body><![CDATA[

181276162

"Developing Mouse, P4"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="abef99cb-e519-436e-a37e-b628536e9fa2"><ac:plain-text-body><![CDATA[

181276160

"Developing Mouse, E18.5"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f0a3a7f0-3f66-44c3-b30e-f56706daa409"><ac:plain-text-body><![CDATA[

181276151

"Developing Mouse, E15.5"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d3b73761-7bf7-48ab-ab2a-e37e9618b6f5"><ac:plain-text-body><![CDATA[

181276130

"Developing Mouse, E13.5"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c2f65d7e-0b33-45f1-bf1e-147cd6eb4b5c"><ac:plain-text-body><![CDATA[

181275741

"Developing Mouse, E11.5"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,126768961]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a494dccd-5859-47c3-a6b4-2bed8482b9b5"><ac:plain-text-body><![CDATA[

138322605

"Human, 34 yrs"

 

"Atlas - Developing Human"

"Developing Human Brain Atlas"

17

 [31,113753815,113753816]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="fe5c2905-8649-4a72-b7f6-a0b747b3b9c1"><ac:plain-text-body><![CDATA[

3

"Human, 21 pcw"

 

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2c4e2d0e-d789-4d32-bb8f-5cc7bd22c90a"><ac:plain-text-body><![CDATA[

138322603

"Human, 15 pcw"

 

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

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