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Atlas Drawings and Ontologies

A set of high resolution digital reference atlases have been created to provide neuroanatomical context to the in situ hybridization and axonal projection data.

From the API, you can:

  • Download the underlying high resolution histological images
  • Download the colorized and label atlas images
  • Download atlas drawings in SVG (scalable vector graphics) format
  • Download the associated structural ontology

The following atlases are available through the API

Atlas ID

Atlas Name

 

Image Type

Ontology

StructureGraph ID

GraphicGroupLabels

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e0cde44e-1832-4928-b311-22204ac3e275"><ac:plain-text-body><![CDATA[

1

"Mouse, P56  Coronal"

 

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28,159226751]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ca9601ab-8df8-4e10-a6fc-ed3bf47ecf8f"><ac:plain-text-body><![CDATA[

2

"Mouse, P56 Sagittal"

 

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f0f1efce-66a9-4060-9b8a-291478a6b846"><ac:plain-text-body><![CDATA[

181276165

"Developing Mouse, P56"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8dcea041-64be-4089-a3e6-64f4d5937ba2"><ac:plain-text-body><![CDATA[

181276164

"Developing Mouse, P14"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,167675952]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f9745db3-0f13-4f09-b2fd-2fc3f81f4b93"><ac:plain-text-body><![CDATA[

181276162

"Developing Mouse, P4"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e9209a22-fa42-43d7-9405-b3972a876ade"><ac:plain-text-body><![CDATA[

181276160

"Developing Mouse, E18.5"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c77932cf-69ab-4dac-897f-f8686218306b"><ac:plain-text-body><![CDATA[

181276151

"Developing Mouse, E15.5"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b046c41f-39e8-4f77-aa78-3359f04da8ee"><ac:plain-text-body><![CDATA[

181276130

"Developing Mouse, E13.5"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f7d36167-6a8f-45a8-ab9e-ff483d38fe02"><ac:plain-text-body><![CDATA[

181275741

"Developing Mouse, E11.5"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,126768961]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="244ae287-61d5-4230-9394-2877654efa8e"><ac:plain-text-body><![CDATA[

138322605

"Human, 34 yrs"

 

"Atlas - Developing Human"

"Developing Human Brain Atlas"

17

 [31,113753815,113753816]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c99b238a-7b1a-42d4-a60e-35aca3a3f0b3"><ac:plain-text-body><![CDATA[

3

"Human, 21 pcw"

 

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e62bc5b4-4498-42f8-872e-4dd8f3d7ad74"><ac:plain-text-body><![CDATA[

138322603

"Human, 15 pcw"

 

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

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