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Atlas Drawings and Ontologies

A set of high resolution digital reference atlases have been created to provide neuroanatomical context to the in situ hybridization and axonal projection data.

From the API, you can:

  • Download the underlying high resolution histological images
  • Download the colorized and label atlas images
  • Download atlas drawings in SVG (scalable vector graphics) format
  • Download the associated structural ontology

The following atlases are available through the API

Atlas ID

Atlas Name

 

Image Type

Ontology

StructureGraph ID

GraphicGroupLabels

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d9b2b08f-e62f-477a-b1cb-556397d0de40"><ac:plain-text-body><![CDATA[

1

"Mouse, P56  Coronal"

 

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28,159226751]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="cc1a6b06-4eb9-4d49-b838-41fe7828ccdb"><ac:plain-text-body><![CDATA[

2

"Mouse, P56 Sagittal"

 

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="80f1e39c-c1d0-44bd-9a79-85776ed6fe9a"><ac:plain-text-body><![CDATA[

181276165

"Developing Mouse, P56"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b4b87288-5606-4c49-ad63-b3e4472c4508"><ac:plain-text-body><![CDATA[

181276164

"Developing Mouse, P14"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,167675952]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="89c124df-e5be-4b2b-8ad0-b71431437f45"><ac:plain-text-body><![CDATA[

181276162

"Developing Mouse, P4"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="389aa9b6-17ae-4a4d-a2cd-012f35c4eb05"><ac:plain-text-body><![CDATA[

181276160

"Developing Mouse, E18.5"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1b4a7091-bcff-4a61-930c-cd2a8e65edcf"><ac:plain-text-body><![CDATA[

181276151

"Developing Mouse, E15.5"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c192d81f-e8d4-4683-85bc-510dd3e8cb81"><ac:plain-text-body><![CDATA[

181276130

"Developing Mouse, E13.5"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bacf5010-b1ab-468a-888e-5dbdfe46aad0"><ac:plain-text-body><![CDATA[

181275741

"Developing Mouse, E11.5"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,126768961]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b6c8dd0f-ff9a-496e-8e83-7a20179b1261"><ac:plain-text-body><![CDATA[

138322605

"Human, 34 yrs"

 

"Atlas - Developing Human"

"Developing Human Brain Atlas"

17

 [31,113753815,113753816]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="01e6df6d-0566-4733-bfd0-86a4768369a8"><ac:plain-text-body><![CDATA[

3

"Human, 21 pcw"

 

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e89e37e6-eb71-4791-b53a-a5312fda21aa"><ac:plain-text-body><![CDATA[

138322603

"Human, 15 pcw"

 

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

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