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Atlas Drawings and Ontologies

A set of high resolution digital reference atlases have been created to provide neuroanatomical context to the in situ hybridization and axonal projection data.

From the API, you can:

  • Download the underlying high resolution histological images
  • Download the colorized and label atlas images
  • Download atlas drawings in SVG (scalable vector graphics) format
  • Download the associated structural ontology

The following atlases are available through the API

Atlas ID

Atlas Name

 

Image Type

Ontology

StructureGraph ID

GraphicGroupLabels

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="301b3fd7-3642-4fe6-aa6b-eca31a020049"><ac:plain-text-body><![CDATA[

1

"Mouse, P56  Coronal"

 

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28,159226751]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5bf23ec5-207c-4fdf-8cfb-ec76db2c2acd"><ac:plain-text-body><![CDATA[

2

"Mouse, P56 Sagittal"

 

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5289bcb2-c293-4838-aaba-4a2fcd671b1b"><ac:plain-text-body><![CDATA[

181276165

"Developing Mouse, P56"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9d4463e0-fc2b-47e3-a896-bda4d3d6748f"><ac:plain-text-body><![CDATA[

181276164

"Developing Mouse, P14"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,167675952]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="515d339c-d94b-4e8f-b5ed-352c8b8377ac"><ac:plain-text-body><![CDATA[

181276162

"Developing Mouse, P4"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d46b88f4-1195-48cd-9dd2-bd6519353754"><ac:plain-text-body><![CDATA[

181276160

"Developing Mouse, E18.5"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c1327856-9bf4-4ff6-9497-35467ba57b63"><ac:plain-text-body><![CDATA[

181276151

"Developing Mouse, E15.5"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f769ab61-11fc-4e63-b856-d74c97678723"><ac:plain-text-body><![CDATA[

181276130

"Developing Mouse, E13.5"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="11195905-0088-4a89-a40d-b554bc1ad866"><ac:plain-text-body><![CDATA[

181275741

"Developing Mouse, E11.5"

 

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,126768961]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="61a8be4a-be30-4fe4-9231-044355728d3c"><ac:plain-text-body><![CDATA[

138322605

"Human, 34 yrs"

 

"Atlas - Developing Human"

"Developing Human Brain Atlas"

17

 [31,113753815,113753816]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3724e5f0-88d7-4591-83f5-f9c6195362c3"><ac:plain-text-body><![CDATA[

3

"Human, 21 pcw"

 

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e3c08c47-0fb2-4b41-b61f-a86e631e38f9"><ac:plain-text-body><![CDATA[

138322603

"Human, 15 pcw"

 

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

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