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Atlas Drawings and Ontologies

A set of high resolution digital reference atlases have been created to provide neuroanatomical context to the in situ hybridization and axonal projection data.

From the API, you can:

  • Download the underlying high resolution histological images
  • Download the colorized and label atlas images
  • Download atlas drawings in SVG (scalable vector graphics) format
  • Download the associated structural ontology

The following atlases are available through the API

Atlas ID

 

Atlas Name

Image Type

Ontology

StructureGraph ID

GraphicGroupLabels

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="296483d2-a6e5-4cda-806e-dbde38c45714"><ac:plain-text-body><![CDATA[

1

 

"Mouse, P56  Coronal"

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28,159226751]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="253374ac-ea24-449f-91c3-103a3400c2ba"><ac:plain-text-body><![CDATA[

2

!http://api.brain-map.org/api/v2/atlas_image_download/100883869?downsample=4&annotation=true

width=32!

"Mouse, P56 Sagittal"

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="abbc1ab3-d90d-4e93-964a-570c0221ea02"><ac:plain-text-body><![CDATA[

181276165

 

"Developing Mouse, P56"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9a4426bf-bab3-4a0c-bd63-23c429986c0f"><ac:plain-text-body><![CDATA[

181276164

 

"Developing Mouse, P14"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,167675952]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1b116e3e-112a-4c9d-9bd2-035c1f78dd8e"><ac:plain-text-body><![CDATA[

181276162

 

"Developing Mouse, P4"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="922f03b6-97f5-4293-9bc5-1adf25c5d421"><ac:plain-text-body><![CDATA[

181276160

 

"Developing Mouse, E18.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a778f28c-f9b6-4538-a436-127ff5ace575"><ac:plain-text-body><![CDATA[

181276151

 

"Developing Mouse, E15.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5116bb9f-3577-45da-8bba-0560887448fb"><ac:plain-text-body><![CDATA[

181276130

 

"Developing Mouse, E13.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7622d768-6c7f-4f3c-a366-3ffbf13af536"><ac:plain-text-body><![CDATA[

181275741

 

"Developing Mouse, E11.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,126768961]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d2d5c394-43c6-4035-9e9b-b1c170fc547d"><ac:plain-text-body><![CDATA[

138322605

 

"Human, 34 yrs"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

17

 [31,113753815,113753816]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0d433d94-4c22-4968-b86e-f91d74c2deeb"><ac:plain-text-body><![CDATA[

3

 

"Human, 21 pcw"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d4028f45-521d-4958-916b-01571c4c9b43"><ac:plain-text-body><![CDATA[

138322603

 

"Human, 15 pcw"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

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