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Atlas Drawings and Ontologies

A set of high resolution digital reference atlases have been created to provide neuroanatomical context to the in situ hybridization and axonal projection data.

From the API, you can:

  • Download the underlying high resolution histological images
  • Download the colorized and label atlas images
  • Download atlas drawings in SVG (scalable vector graphics) format
  • Download the associated structural ontology

The following atlases are available through the API

Atlas ID

 

Atlas Name

Image Type

Ontology

StructureGraph ID

GraphicGroupLabels

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="689e06b9-82ba-42ae-b0f6-d26b32294101"><ac:plain-text-body><![CDATA[

[1

http://atlas.brain-map.org/atlas?atlas=1]

!P56_Coronal.png

width=32!

"Mouse, P56  Coronal"

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28,159226751]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="67a41815-98e6-480e-9c41-216908128046"><ac:plain-text-body><![CDATA[

[2

http://atlas.brain-map.org/atlas?atlas=2]

!P56_Sagittal.png

width=32!

"Mouse, P56 Sagittal"

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c2ff6fe6-c1f3-4d81-a7a2-d603a98006b5"><ac:plain-text-body><![CDATA[

[181276165

http://atlas.brain-map.org/atlas?atlas=181276165]

!DevMouse_P56.jpg

width=32!

"Developing Mouse, P56"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e87c5f9a-2f75-4d6f-892c-602dd2944cb1"><ac:plain-text-body><![CDATA[

[181276164

http://atlas.brain-map.org/atlas?atlas=181276164]

!DevMouse_P14.jpg

width=32!

"Developing Mouse, P14"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,167675952]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1a2f95bc-973c-43db-8b68-5414e418724a"><ac:plain-text-body><![CDATA[

[181276162

http://atlas.brain-map.org/atlas?atlas=181276162]

!DevMouse_P4.jpg

width=32!

"Developing Mouse, P4"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6ed5d00f-c66f-4ac7-89e3-0c1228ab61a0"><ac:plain-text-body><![CDATA[

[181276160

http://atlas.brain-map.org/atlas?atlas=181276160]

!DevMouse_E18pt5.jpg

width=32!

"Developing Mouse, E18.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0b5f6049-a819-4731-80d6-07142497ed78"><ac:plain-text-body><![CDATA[

[181276151

http://atlas.brain-map.org/atlas?atlas=181276151]

!DevMouse_E15pt5.jpg

width=32!

"Developing Mouse, E15.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="53e02ca9-75e5-460a-8587-b33f2d5bc3c7"><ac:plain-text-body><![CDATA[

[181276130

http://atlas.brain-map.org/atlas?atlas=181276130]

!DevMouse_E13pt5.jpg

width=32!

"Developing Mouse, E13.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="eb9d61c2-3aff-41c8-aa34-d52be6003b2b"><ac:plain-text-body><![CDATA[

[181275741

http://atlas.brain-map.org/atlas?atlas=181275741]

!DevMouse_E11pt5.jpg

width=32!

"Developing Mouse, E11.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,126768961]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4e397e34-1a3f-44ef-8fea-63735e8a908b"><ac:plain-text-body><![CDATA[

[138322605

http://atlas.brain-map.org/atlas?atlas=138322605]

!Human_34y.jpg

width=32!

"Human, 34 yrs"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

17

 [31,113753815,113753816]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bea0d48c-6312-48b2-a300-93dfbb5f77d4"><ac:plain-text-body><![CDATA[

[3

http://atlas.brain-map.org/atlas?atlas=3]

!Human_21pcw.jpg

width=32!

"Human, 21 pcw"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b87377bb-8761-42b8-b485-366663a57d7e"><ac:plain-text-body><![CDATA[

[138322603

http://atlas.brain-map.org/atlas?atlas=138322603]

!Human_15pcw.jpg

width=32!

"Human, 15 pcw"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

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