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   Documentation: Allen Mouse Brain Atlas
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{td}{*}Document{*}{td}{td}{*}Description{*}{td}
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{td}[In Situ Hybridization|^ABADataProductionProcesses.pdf] {td}{td}Processes and procedures used to perform ISH{td}
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{td}[Informatics Data Processing|^InformaticsDataProcessing.pdf] {td}{td}Design and implementation of the Informatics Data Pipeline (IDP){td}
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{td}[Reference Atlas, Version 1 (2008)|^AllenReferenceAtlas_v1_2008_102011.pdf] {td}{td}Overview of the sagittal and coronal Allen Reference Atlases{td}
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{td}[Reference Atlas, Version 2 (2011)|^AllenReferenceAtlas_v2_2011.pdf] {td}{td}Overview of the sagittal and coronal Allen Reference Atlases{td}
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{td}[Mouse CCF, Reference Atlas, Version 3 (2015)|^MouseCCF.pdf] {td}{td}Overview of the design and implementation of the Allen Mouse Common Coordinate Framework{td}
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{td}[Fine Structure Annotation|^FineStructureAnnotation.pdf] {td}{td}Explanation of the informatics methods used to create the fine structure annotations{td}
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{td}[Acknowledgement of Collaborators|^ALLEN Mouse Brain Atlas_Acknowledgements.pdf] {td}{td}Recognition of collaborators and others who provided assistance{td}
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   Supplemental Data: Allen Mouse Brain Atlas
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{td}[ISH Platform Controls|^ISH_Platform_Controls.pdf] {td}{td}Quality control standards for high-throughput RNA in situ hybridization data generation{td}
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{td}[Cross Platform Validation|^Cross_Platform_Validation.pdf]{td}{td}Methods for validating the data{td}
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{td}[AGEA User Guide|^AGEA.pdf]{td}{td}Overview of the Anatomic Gene Expression Atlas (AGEA){td}
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{td}[Sleep Study|^Sleep_Study.pdf]{td}{td}PDF Article of the Sleep Study Results{td}
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{td}[Mouse Strains Study|^Strains_Study.pdf]{td}{td}PDF Article of the Mouse Strains Study Results{td}
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{td}[FSA Reports|http://community.brain-map.org/confluence/display/DataAnno/Home] {td}{td}Compilations of neuroanatomic and gene expression characteristics for key brain regions or nuclei{td}
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{td}[Somatosensory Annotation|^SomatosensoryAnnotationWhitePaper.pdf] {td}{td}Technical white paper detailing the methods used to manually annotate the expression patterns of genes in the mouse somatosensory cortex{td}
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{td}[SomatosensoryAnnotation.xls|^SomatosensoryAnnotation.xls] {td}{td}Spreadsheet containing the somatosensory annotations{td}
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{td}[Comparison of the Top 1000 Genes|^Top1000GenesAnalysis.pdf] {td}{td}The 1000 most requested genes were analyzed as a validation of the ISH data{td}
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{td}[Comparison of the Top 1000 Genes (Oct 2010)|^Top1000genesanalysisfina_2010.pdf] {td}{td}An updated list of the 1000 most requested genes that were analyzed as a validation of the ISH data{td}
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