Allen Mouse Brain Atlas

This is the online help for the ALLEN Mouse Brain Atlas web application.

The Allen Mouse Brain Atlas is a genome-wide, high-resolution atlas of gene expression throughout the adult mouse brain.

Key features:
In situ hybridization data
  • Genome-wide coverage
  • Comprehensive anatomic coverage
  • Microscopic resolution down to the cellular level
    NeuroBlast search for genes with similar spatial expression patterns
    AGEA tool for exploring transcriptome-based brain architecture and gene discovery
    Brain Explorer® 3-D viewer
    Anatomic reference atlases
  • Coronal and sagittal plates
  • High-resolution Nissl images
  • Structure ontology