{use-layout:documentation|latch=false}

{section}
{column}{column}
{column:width=75%}

{align:center}
{html}
<table border="1" cellpadding="5" width="800">
 <th align="left" style="color:white;background-color:#31506C">
   Documentation: Allen Mouse Brain Atlas
 </th>
<tr><td>
{html}
{table:bgcolor=white|cellpadding=5|cellspacing=5|frame=none|rules=none}
{tr}
{td}{*}Document{*}{td}{td}{*}Description{*}{td}
{tr}
{tr}
{td}[In Situ Hybridization|^ABADataProductionProcesses.pdf] {td}{td}Processes and procedures used to perform ISH{td}
{tr}
{tr}
{td}[Informatics Data Processing|^InformaticsDataProcessing.pdf] {td}{td}Design and implementation of the Informatics Data Pipeline (IDP){td}
{tr}
{tr}
{td}[Reference Atlas, Version 1 (2008)|^AllenReferenceAtlas_v1_2008_102011.pdf] {td}{td}Overview of the sagittal and coronal Allen Reference Atlases{td}
{tr}
{tr}
{td}[Reference Atlas, Version 2 (2011)|^AllenReferenceAtlas_v2_2011.pdf] {td}{td}Overview of the sagittal and coronal Allen Reference Atlases{td}
{tr}
{tr}
{td}[Fine Structure Annotation|^FineStructureAnnotation.pdf] {td}{td}Explanation of the informatics methods used to create the fine structure annotations{td}
{tr}
{tr}
{td}[Acknowledgement of Collaborators|^ALLEN Mouse Brain Atlas_Acknowledgements.pdf] {td}{td}Recognition of collaborators and others who provided assistance{td}
{tr}
{table}
{html}
</td></tr>
</table>
{html}
{align}

\\

{align:center}
{html}
<table border="1" cellpadding="5" width="800">
 <th align="left" style="color:white;background-color:#31506C">
   Supplemental Data: Allen Mouse Brain Atlas
 </th>
<tr><td>
{html}
{table:bgcolor=white|cellpadding=5|cellspacing=5|frame=none|rules=none}
{tr}
{td}{*}Document{*}{td}{td}{*}Description{*}{td}
{tr}
{tr}
{td}[ISH Platform Controls|^ISH_Platform_Controls.pdf] {td}{td}Quality control standards for high-throughput RNA in situ hybridization data generation{td}
{tr}
{tr}
{td}[Cross Platform Validation|^Cross_Platform_Validation.pdf]{td}{td}Methods for validating the data{td}
{tr}
{tr}
{td}[AGEA User Guide|^AGEA.pdf]{td}{td}Overview of the Anatomic Gene Expression Atlas (AGEA){td}
{tr}
{tr}
{td}[Sleep Study|^Sleep_Study.pdf]{td}{td}PDF Article of the Sleep Study Results{td}
{tr}
{tr}
{td}[FSA Reports|http://community.brain-map.org/confluence/display/DataAnno/Home] {td}{td}Compilations of neuroanatomic and gene expression characteristics for key brain regions or nuclei{td}
{tr}
{tr}
{td}[Somatosensory Annotation|^SomatosensoryAnnotationWhitePaper.pdf] {td}{td}Technical white paper detailing the methods used to manually annotate the expression patterns of genes in the mouse somatosensory cortex{td}
{tr}
{tr}
{td}[SomatosensoryAnnotation.xls|^SomatosensoryAnnotation.xls] {td}{td}Spreadsheet containing the somatosensory annotations{td}
{tr}
{tr}
{td}[Comparison of the Top 1000 Genes|^Top1000GenesAnalysis.pdf] {td}{td}The 1000 most requested genes were analyzed as a validation of the ISH data{td}
{tr}
{tr}
{td}[Comparison of the Top 1000 Genes (Oct 2010)|^Top1000genesanalysisfina_2010.pdf] {td}{td}An updated list of the 1000 most requested genes that were analyzed as a validation of the ISH data{td}
{tr}
{table}
{html}
</td></tr>
</table>
{html}
{align}


{column}
{column}{column}
{section}