Documentation: Allen Cell Types Database




Document


Description



Overview


Overview of methods for the Cell Types database





Transcriptomics Overview


Description of methods for single cell RNA isolation and sequence analysis




Electrophysiology Overview


Description of methods for tissue processing, electrophysiology data acquisition, and analysis of intrinsic properties




Morphology and Histology Overview


Description of methods for histological staining, image acquisition, 3D reconstruction and structure-based categorization




Neuronal Models: GLIF


Description of the generalized leaky integrate-and-fire single-neuron models




Neuronal Models: Biophysical - Perisomatic


Description of the biophysically realistic, single-neuron models with passive dendrites and active soma (perisomatic)




Neuronal Models: Biophysical - All Active


Description of the biophysically realistic, single-neuron models with active conductances everywhere (all-active)




Mouse CCF, Reference Atlas, Version 3 (2017)


Overview of the design and implementation of the Allen Mouse Common Coordinate Framework




Acknowledgement of Collaborators


Recognition of collaborators and others who provided assistance




Case Qualification and Donors


Summary of tissue donor qualification process and information about each donor