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The Interactive Atlas Viewer (IAV) is a valuable tool for exploring the anatomy of the mouse brain and providing a context for the experimental images from the Allen Mouse Brain AtlasReference Atlases.

Accessing the Interactive Atlas Viewer

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The IAV is a stand alone application that can be used to explore adult mouse neuroanatomy. It can also be utilized in the High Resolution Image Viewer to visualize the reference atlas side by side with and ISH image series. To use in this manner, please click here.

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From this menu, you have access to any of the Allen Brain References Reference Atlases. When a structure is selected, moving to another atlas that uses the same ontology, will open that atlas at the same selected structure. Conversely, atlases that use different ontologies (i.e adult mouse vs. developing mouse) will not synch to the same location.

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