To provide a uniform look over all experiments, default window and level values were computed using intensity histograms. For each experiment, the upper threshold defaults to (2.33 x the 95th percentile value) for the red channel and (6.33 x the 95th percentile value) for the green channel. The default threshold can be used to download images and/or image region in 8-bit per channel image format.
In the web application, images from the experiment are visualized in an experimental detail page. All displayed information, images and structural projection values is also available through the API.
Figure:Experiment detail page for an injection into the primary visual area.
See the image download page to learn how to download images at different resolution and regions of interest.
- RMA query to fetch meta-information of one projection image
- Download image downsampled by factor of 6 using default thresholds
- Download a region of interest at full resolution using default thresholds
3-D Reference Model for Mouse Connectivity