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Atlas ID

 

Atlas Name

Image Type

Ontology

StructureGraph ID

GraphicGroupLabels

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="af6379c1e98f47da-a6856d18-48ce4e93-96c18c85-5b6ac28c00e04d92331ce75d"><ac:plain-text-body><![CDATA[

[1

http://atlas.brain-map.org/atlas?atlas=1]

!P56_Coronal.png

width=32!

"Mouse, P56  Coronal"

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28,159226751]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9163ffdd7bd38c5b-94df381f-49a34499-b6b2990c-a9c404ea5e5c473c30f5d4ed"><ac:plain-text-body><![CDATA[

[2

http://atlas.brain-map.org/atlas?atlas=2]

!P56_Sagittal.png

width=32!

"Mouse, P56 Sagittal"

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="500dfde5c387822e-cbc2c653-445d47c6-a8f785ee-fae40234edae038e8886444c"><ac:plain-text-body><![CDATA[

[181276165

http://atlas.brain-map.org/atlas?atlas=181276165]

!DevMouse_P56.jpg

width=32!

"Developing Mouse, P56"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="65282332bc74b9f1-ad1c1d85-44b34df8-a0079046-4b91100b12340d478cfd1c9a"><ac:plain-text-body><![CDATA[

[181276164

http://atlas.brain-map.org/atlas?atlas=181276164]

!DevMouse_P14.jpg

width=32!

"Developing Mouse, P14"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,167675952]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="280d350149c5a5d6-49e5e490-4efe4498-b8328765-39fef7dd9ee76383c2d8d8e2"><ac:plain-text-body><![CDATA[

[181276162

http://atlas.brain-map.org/atlas?atlas=181276162]

!DevMouse_P4.jpg

width=32!

"Developing Mouse, P4"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6157c14b60bc1ff8-ecbd0681-4e744721-b5d08cc9-18be31f14093aa7d9a60d3a0"><ac:plain-text-body><![CDATA[

[181276160

http://atlas.brain-map.org/atlas?atlas=181276160]

!DevMouse_E18pt5.jpg

width=32!

"Developing Mouse, E18.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="491e1a5c217badb8-a86e7f18-44844936-95de86af-b9f22b6df37adc0d769643d4"><ac:plain-text-body><![CDATA[

[181276151

http://atlas.brain-map.org/atlas?atlas=181276151]

!DevMouse_E15pt5.jpg

width=32!

"Developing Mouse, E15.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c7e44e0d244775a9-a1855bfd-4f104be1-a66ea6bd-65f7333c93d0b1355412b0dc"><ac:plain-text-body><![CDATA[

[181276130

http://atlas.brain-map.org/atlas?atlas=181276130]

!DevMouse_E13pt5.jpg

width=32!

"Developing Mouse, E13.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="042d7777c822735a-de03d352-46784464-9060b1b1-65386390a72be2d51baf6a04"><ac:plain-text-body><![CDATA[

[181275741

http://atlas.brain-map.org/atlas?atlas=181275741]

!DevMouse_E11pt5.jpg

width=32!

"Developing Mouse, E11.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,126768961]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2de524f4e5d7f171-829087f3-42ac40ae-9b07a3f4-5f555da4c9e4818989946455"><ac:plain-text-body><![CDATA[

[138322605

http://atlas.brain-map.org/atlas?atlas=138322605]

!Human_34y.jpg

width=32!

"Human, 34 yrs"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

17

 [31,113753815,113753816]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b7646f7fdb7e2a1e-d192a9bb-46e84ae8-839cb0da-9943bbbbeb98e45b9219ea0d"><ac:plain-text-body><![CDATA[

[3

http://atlas.brain-map.org/atlas?atlas=3]

!Human_21pcw.jpg

width=25!

"Human, 21 pcw"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="18a2ffcfb068e3eb-81b74af8-42794f64-88539fc5-8c3205b126fbfa20d53738f9"><ac:plain-text-body><![CDATA[

[138322603

http://atlas.brain-map.org/atlas?atlas=138322603]

!Human_15pcw.jpg

width=20!

"Human, 15 pcw"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

...

Ontology ID

Ontology Name

StructureGraph
ID

Uses

1

"Mouse Brain Atlas"

1

Mouse Brain

  • Reference Atlases
  • Brain Explorer, AGEA
  • Informatics quantification of ISH data
  • Search services
    Mouse Connectivity
  • Informatics quantification of projection data
  • Search services

12

"Developing Mouse Brain Atlas"

17

Developing Mouse Brain

  • Reference Atlases
  • Brain Explorer, AGEA
  • Informatics quantification of ISH data
  • Search services

7

"Human Brain Atlas"

10

Human Brain

  • Annotation of Microarray Sampling Sites
  • Brain Explorer
  • Heatmap and search services
  • "Hot spot" annotation of ISH data

11

"Developing Human Brain Atlas"

16

Developing Human Brain

  • Reference Atlases
  • Annotation of Transcriptome and Microarray Sampling Sites
  • Heatmap and search services
  • "Hot spot" annotation of ISH data

4

"Non-Human Primate Brain Atlas"

8

Non-Human Primate

  • Annotation of Microarray Sampling Sites
  • Heatmap and search services
  • "Hot spot" annotation of ISH data

From the API, Structure and Ontology information can be downloaded in various formats.

Examples:

  • Download the "Human Brain Atlas" ontology as CSV file
    Code Block
  • Download the "Mouse Brain Atlas" ontology as a hierarchically structured json file
    Code Block
    
    http://api.brain-map.org/api/v2/structure_graph_download/1.json