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The following set of image synchronization services uses the image alignment results from the Informatics Data Processing Pipeline. Note: all locations on SectionImages are reported in pixel coordinates and all locations in 3-D ReferenceSpaces are reported in microns.
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Image-
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Atlas
For a specified Atlas, find the closest annotated SectionImage and (x,y) location as defined by a seed SectionImage and seed (x,y) location.
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section_image_id | Closest annotated SectionImage to the seed SectionImage and pixel location. |
section_number | Section number of the closest SectionImage. |
x | Closest x pixel coordinate on the closest SectionImage. |
y | Closest y pixel coordinate on the closest SectionImage. |
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Image-
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to_
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Image
For a list of target SectionDataSets, find the closest SectionImage and (x,y) location as defined by a seed SectionImage and seed (x,y) pixel location.
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section_image_id | Closest SectionImage to the seed SectionImage and pixel location. |
section_number | Section number of the closest SectionImage. |
x | Closest x pixel coordinate on the closest SectionImage. |
y | Closest y pixel coordinate on the closest SectionImage. |
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Image-
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to-
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Image 2-D
For a list of target SectionImages, find the closest (x,y) location as defined by a seed SectionImage and seed (x,y) location.
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x | Closest x pixel coordinate to the seed location. |
y | Closest y pixel coordinate to the seed location. |
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Reference-
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To-
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Image
For a list of target SectionDataSets, find the closest SectionImage and (x,y) location as defined by a (x,y,z) location in a specified ReferenceSpace.
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section_image_id | Closest SectionImage to the seed ReferenceSpace and location. |
section_number | Section number of the closest SectionImage. |
x | Closest x pixel coordinate to the seed location. |
y | Closest y pixel coordinate to the closest SectionImage. |
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Image-
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To-
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Reference
For a specified SectionImage and (x,y) location, return the (x,y,z) location in the ReferenceSpace of the associated SectionDataSet.
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x | x coordinate (in microns) in the associated ReferenceSpace. |
y | y coordinate (in microns) in the associated ReferenceSpace. |
z | z coordinate (in microns) in the associated ReferenceSpace. |
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Structure-
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To-
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Image
For a list of target structures, find the closest SectionImage and (x,y) location as defined by the centroid of each Structure.
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