CONNECTED SERVICES AND PIPES
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service::dev_human_correlation
Parameters
set | String | Data set name: rna_seq_genes, rna_seq_exons, exon_microarray_genes or exon_microarray_exons |
donors | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures | Array | Comma delimited list of Structure.id or Structure.acronym. |
probes | Integer | Probe id to correlate against. |
sort_order | String (optional) | 'asc' for ascending order, or 'desc' for descending order. Defaults to descending. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Examples
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_correlation[set$eqrna_seq_genes][probes$eq1090294][structures$eq'CBC'] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_correlation[set$eqrna_seq_exons][probes$eq279330730][structures$eq'CBC'] Retrieve exon_microarray_genes correlation values for structure with the acronym, "CBC". http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_correlation[set$eqexon_microarray_genes][probes$eq9463][structures$eq'CBC'] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_correlation[set$eqexon_microarray_exons][probes$eq280550735][structures$eq'CBC'] |
service::dev_human_differential
Parameters
set | String | Data set name: rna_seq_genes, rna_seq_exons, exon_microarray_genes or exon_microarray_exons |
donors1 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures1 | Array | Comma delimited list of Structure.id. |
donors2 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures2 | Array | Comma delimited list of Structure.id. |
sort_by | String (optional) | 'p-value' or 'fold-change'. Defaults to 'p-value'. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Examples
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_differential[set$eq'rna_seq_genes'][structures1$eqDFC][structures2$eqMFC] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_differential[set$eq'rna_seq_genes'][structures1$eqDFC][structures2$eqMFC] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_differential[set$eq'exon_microarray_exons'][structures1$eqDFC][structures2$eqMFC] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_differential[set$eq'exon_microarray_genes'][structures1$eqDFC][structures2$eqMFC] |
service::dev_human_expression
Parameters
set | String | Data set name: rna_seq_genes, rna_seq_exons, exon_microarray_genes or exon_microarray_exons |
probes | Integer | Probe.id to correlate against |
donors | Integer (optional) | Comma delimited list of Donor.id to filter expression results. |
structures | Integer (optional) | Comma delimited list of Stucture.id to filter expression results. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Examples
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_expression[set$eq'rna_seq_genes'][probes$eq1090294] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_expression[set$eq'rna_seq_exons'][probes$eq279330730] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_expression[set$eq'exon_microarray_genes'][probes$eq9463] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_expression[set$eq'exon_microarray_exons'][probes$eq280550735] |
service::dev_human_microarray_correlation
Parameters
donors | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures | Array | Comma delimited list of Structure.id or Structure.acronym. |
probes | Integer | Probe id to correlate against |
sort_order | String (optional) | 'asc' or 'desc'. Defaults to 'desc'. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_microarray_correlation[probes$eq1048426][structures$eqSG] |
service::dev_human_microarray_differential
Parameters
donors1 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures1 | Array | Comma delimited list of Structure.id. |
donors2 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures2 | Array | Comma delimited list of Structure.id. |
sort_by | String (optional) | 'p-value' or 'fold-change'. Defaults to 'p-value'. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_microarray_differential[structures1$eqMZ][structures2$eqCP] |
service::dev_human_microarray_expression
Parameters
probes | Integer | Comma delimited list of Probe.id to filter microarray expression results. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
donors | Integer (optional) | Comma delimited list of Donor.id to filter microarray expression results. |
structures | Integer (optional) | Comma delimited list of Structure.id to filter microarray expression results. |
Example
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_microarray_expression[probes$eq1053223,1053224][donors$eq12566][structures$eq11587] |
service::dev_mouse_agea
Parameters
seed_age | String | Age.id |
map_age | String | Age.id |
seed_point | Array | Comma delimited list of integers representing a point in the age's space. |
seed_threshold | Array | Pair of floating point values representing the correlation seed age threshold. |
map_threshold | Array | Pair of floating point values representing the correlation map age threshold. |
contrast_threshold | Array (optional) | Pair of integer values representing the contrast domain threshold. |
target_threshold | Array (optional) | Pair of integer values representing the target domain threshold. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_mouse_agea[seed_age$eq'E18.5'][map_age$eq'E15.5'][seed_point$eq4200,2380,2360] [map_threshold$eq0.467,0.657][seed_threshold$eq0.811,0.924] |
service::dev_mouse_correlation
Parameters
row | Integer | DataSet.id or Gene.id to correlate against. |
structures | Array (optional) | Comma delimited list of Integer Structure.id or String Structure.acronym. |
ages | Array (optional) | Comma delimited list of Age.name. |
sort_order | String (optional) | 'asc' or 'desc'. Defaults to 'desc'. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_mouse_correlation[row$eq13267][structures$eq'NP'][ages$eq'P14','P28'] |
service::gbm_correlation
Parameters
donors | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures | Array | Comma delimited list of Structure.id or Structure.acronym. |
probes | Integer | Probe id to correlate against |
sort_order | String (optional) | 'asc' or 'desc'. Defaults to 'desc'. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::gbm_correlation[probes$eq3551][structures$eqGBM] |
service::gbm_differential
Parameters
donors1 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures1 | Array | Comma delimited list of Structure.id. |
donors2 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures2 | Array | Comma delimited list of Structure.id. |
sort_by | String (optional) | 'p-value' or 'fold-change'. Defaults to 'p-value'. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::gbm_differential[structures1$eqGBM][structures2$eqCTpan] |
service::gbm_expression
Parameters
probes | Integer | Comma delimited list of Probe.id to filter microarray expression results. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
donors | Integer (optional) | Comma delimited list of Donor.id to filter gbm expression results. |
structures | Integer (optional) | Comma delimited list of Structure.id to filter gbm expression results. |
Example
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::gbm_expression[probes$eq3551][donors$eq703393][structures$eqGBM] |
service::gbm_ish_differential
Parameters
structures1 | Array | Comma delimited list of Structure.id. |
structures2 | Array | Comma delimited list of Structure.id. |
threshold1 | Array (optional) | Comma delimited Integer pair indicating thresholds for domain 1. |
threshold2 | Array (optional) | Comma delimited Integer pair indicating thresholds for domain 2. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Examples
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::gbm_ish_differential[structures1$eqCTpnn][structures2$eqIT] |
service::gbm_ish_expression
Parameters
structures | Array | Comma delimited list of Structure.id. |
threshold | Array (optional) | Comma delimited Integer pair indicating thresholds. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Examples
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::gbm_ish_expression[structures$eqCTpnn][threshold$eq0,100000] |
service::human_microarray_correlation
Parameters
donors | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures | Array | Comma delimited list of Structure.id or Structure.acronym. |
probes | Integer | Probe.id to correlate against. |
sort_order | String (optional) | 'asc' or 'desc'. Defaults to 'desc'. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
|---|
http://api.brain-map.org/api/v2/data/query.xml?criteria= service::human_microarray_correlation[probes$eq1048426][structures$eq'FL'] |
service::human_microarray_differential
Parameters
donors1 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures1 | Array | Comma delimited list of Structure.id. |
donors2 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures2 | Array | Comma delimited list of Structure.id. |
sort_by | String | 'p-value' or 'fold-change'. Defaults to 'p-value'. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Examples
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::human_microarray_differential[structures1$eq4005][structures2$eq4006] |
service::human_microarray_expression
Parameters
probes | Integer | Comma delimited list of Probe.id to filter microarray expression results. |
donors | Integer (optional) | Comma delimited list of Donor.id to filter microarray expression results. |
structures | Integer (optional) | Comma delimited list of Stucture.id to filter microarray expression results. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Examples
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::human_microarray_expression[probes$eq1014952][donors$eq9861,10021][structures$eq4079] |
service::mouse_agea
Parameters
set | String | Data set name: mouse_coronal. |
seed_age | String | An age identifier. P56. |
map_age | String | An age identifier. P56. |
seed_point | Array | A comma delimited triple indicating the coordinates of a point in 3-D SectionDataSet space. |
correlation_threshold1 | Float (optional) | Correlation threshold for domain 1. |
correlation_threshold2 | Float (optional) | Correlation threshold for domain 2. |
threshold1 | Array (optional) | Comma delimited Integer pair defining the threshold for domain 1. |
threshold2 | Array (optional) | Comma delimited Integer pair defining the threshold for domain 2. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_agea[set$eqmouse_coronal][seed_age$eqP56][map_age$eqP56][seed_point$eq6800,4200,5600] [correlation_threshold1$eq0.84][correlation_threshold2$eq0.93] |
service::mouse_correlation
Parameters
set | String | Data set name: mouse or mouse_coronal. |
structures | Array (optional) | Comma delimited list of Structure.id or Structure.acronym. |
row | Integer | DataSet.id to correlate against. |
sort_order | String (optional) | 'asc' or 'desc'. Defaults to 'desc'. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_correlation[set$eqmouse][row$eq68918934] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_correlation[set$eqmouse_coronal][row$eq357096] |
service::mouse_differential
Parameters
set | String | Data set name: mouse or mouse_coronal. |
structures1 | Array | Comma delimited list of Structure.id. |
structures2 | Array | Comma delimited list of Structure.id. |
threshold1 | Array (optional) | Comma delimited Integer pair indicating thresholds for domain 1. |
threshold2 | Array (optional) | Comma delimited Integer pair indicating thresholds for domain 2. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Examples
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_differential[set$eq'mouse'][structures1$eq8][structures2$eq315] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_differential[set$eq'mouse_coronal'][structures1$eq8][structures2$eq315] |
service::mouse_connectivity_correlation
Parameters
row | Integer | SectionDataSet.id to correlate against. |
structures | Array (optional) | Comma delimited list of Integer Structure.id or String Structure.acronym. |
hemisphere | String (optional) | Structure’s hemisphere. Use 'Right' or 'Left'. Defaults to both hemispheres. |
transgenic_lines | Array (optional) | Comma delimited list of Integer TransgenicLine.id or String TransgenicLine.name. Specify ID 0 to exclude all TransgenicLines. |
injection_structures | Array (optional) | Comma delimited list of Integer Structure.id or String Structure.acronym. |
primary_structure_only | String (optional) | 'true' or 'false' |
sort_order | String (optional) | 'asc' or 'desc'. Defaults to 'desc'. |
product_ids | Array (optional) | Comma delimited list of Integer Product.ids. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_connectivity_correlation[row$eq112162251][structures$eqTH][hemisphere$eqright][num_rows$eq100][transgenic_lines$eq0,177838259] |
service::mouse_connectivity_injection_coordinate
Search for injection sites near a set of 3-D coordinates, ranking the results by their distance from the coordinates.
Parameters
seed_point | Array | A comma delimited triple indicating the coordinates of a point in 3-D space. |
transgenic_lines | Array (optional) | Comma delimited list of Integer TransgenicLine.id or String TransgenicLine.name. Specify ID 0 to exclude all TransgenicLines. |
injection_structures | Array (optional) | Comma delimited list of Integer Structure.id or String Structure.acronym. |
primary_structure_only | String (optional) | 'true' or 'false' |
product_ids | Array (optional) | Comma delimited list of Integer Product.ids. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_connectivity_injection_coordinate[seed_point$eq6600,5400,4800][transgenic_lines$eq0] |
service::mouse_connectivity_injection_structure
Search by injection structures, ranking the results the results by signal in the target structures.
Parameters
injection_structures | Array | Comma delimited list of Integer Structure.id or String Structure.acronym. |
target_domain | Array (optional) | Comma delimited list of Integer Structure.id or String Structure.acronym. |
injection_hemisphere | String (optional) | 'Right' or 'Left'. Defaults to both hemispheres. |
target_hemisphere | String (optional) | 'Right' or 'Left'. Defaults to both hemispheres. |
transgenic_lines | Array (optional) | Comma delimited list of Integer TransgenicLine.id or String TransgenicLine.name. Specify ID 0 to exclude all TransgenicLines. |
injection_domain | Array (optional) | Comma delimited list of Integer Structure.id or String Structure.acronym. |
primary_structure_only | String (optional) | 'true' or 'false' |
product_ids | Array (optional) | Comma delimited list of Integer Product.ids. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
|---|
http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_connectivity_injection_structure[injection_structures$eqTH][injection_hemisphere$eqRight][target_domain$eqVIS][target_hemisphere$eqRight][transgenic_lines$eq0] |
service::mouse_connectivity_target_spatial
Displays all SectionDataSets with projection signal density >= 0.1 at the seed point. This service also returns the path along the most dense pixels from the seed point to the center of each injection site.
Parameters
seed_point | Array | A comma delimited triple indicating the coordinates of a point in 3-D SectionDataSet space. |
transgenic_lines | Array (optional) | Comma delimited list of Integer TransgenicLine.id or String TransgenicLine.name. Specify ID 0 to exclude all TransgenicLines. |
section_data_set | Integer (optional) | SectionDataSet.id to filter the results. |
injection_structures | Array (optional) | Comma delimited list of Integer Structure.id or String Structure.acronym. |
primary_structure_only | String (optional) | 'true' or 'false' |
product_ids | Array (optional) | Comma delimited list of Integer Product.ids. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
|---|
http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_connectivity_target_spatial[seed_point$eq6600,5400,4800][start_row$eq25][num_rows$eq50] |
service::nhp_lmd_microarray_correlation
Parameters
donors | Array (optional) | comma separated list of integers Donor ids. Defaults to all donors. |
structures | Array | Comma delimited list of Structure.id. |
probes | Integer | Probe.id to correlate against. |
sort_order | String (optional) | 'asc' or 'desc'. Defaults to 'asc'. |
start_row | Integer (optional) | starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
|---|
http://api.brain-map.org/api/v2/data/query.xml?criteria= service::nhp_lmd_microarray_correlation[probes$eq30357][structures$eqBN] |
service::nhp_lmd_microarray_differential
Parameters
donors1 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures1 | Array | Comma delimited list of Structure.id. |
donors2 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures2 | Array | Comma delimited list of Structure.id. |
sort_by | String (optional) | 'p-value' or 'fold-change'. Defaults to 'p-value'. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
|---|
http://api.brain-map.org/api/v2/data/query.xml?criteria= service::nhp_lmd_microarray_differential[structures1$eqHF][structures2$eqBN] |
service::nhp_lmd_microarray_expression
Parameters
probes | Integer | Probe.id to correlate against. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
|---|
http://api.brain-map.org/api/v2/data/query.xml?criteria= service::nhp_lmd_microarray_expression[probes$eq15815] |
service::nhp_macro_microarray_correlation
Parameters
donors | Array (optional) | Donor.id. Defaults to all donors. |
structures | Array | Comma delimited list of Structure.id. |
probes | Integer | Probe.id to correlate against. |
sort_order | String (optional) | 'asc' or 'desc'. Defaults to 'asc'. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
|---|
http://api.brain-map.org/api/v2/data/query.xml?criteria= service::nhp_macro_microarray_correlation[probes$eq49067][structures$eqBN] |
service::nhp_macro_microarray_differential
Parameters
donors1 | Array (optional) | Donor.id. Defaults to all donors. |
structures1 | Array | Comma delimited list of Structure.id. |
donors2 | Array (optional) | Donor.id. Defaults to all donors. |
structures2 | Array | Comma delimited list of Structure.id. |
sort_by | String (optional) | 'p-value' or 'fold-change'. Defaults to 'p-value'. |
start_row | Integer (optional) | starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Examples
| No Format |
|---|
http://api.brain-map.org/api/v2/data/query.xml?criteria= service::nhp_macro_microarray_differential[structures1$eqHF][structures2$eqBN] |
service::nhp_macro_microarray_expression
Parameters
probes | Integer | Probe.id to correlate against. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
|---|
http://api.brain-map.org/api/v2/data/query.xml?criteria= service::nhp_macro_microarray_expression[probes$eq15815] |
service::tbi_correlation
Parameters
donors | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures | Array | Comma delimited list of Structure.id or Structure.acronym. |
probes | Integer | Probe id to correlate against |
sort_order | String (optional) | 'asc' or 'desc'. Defaults to 'desc'. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
| No Format |
|---|
http://api.brain-map.org/api/v2/data/query.xml?criteria= service::tbi_correlation[structures$eqHIP][probes$eq499304660] |
service::tbi_differential
Parameters
donors1 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures1 | Array | Comma delimited list of Structure.id. |
donors2 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. |
structures2 | Array | Comma delimited list of Structure.id. |
sort_by | String (optional) | 'p-value' or 'fold-change'. Defaults to 'p-value'. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
Example
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::tbi_differential[structures1$eqFWM][structures2$eqTCx] |
service::tbi_expression
Parameters
probes | Integer | Comma delimited list of Probe.id to filter microarray expression results. |
start_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. |
num_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. |
donors | Integer (optional) | Comma delimited list of Donor.id to filter gbm expression results. |
structures | Integer (optional) | Comma delimited list of Structure.id to filter gbm expression results. |
Example
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::tbi_expression[donors$eq309335438][structures$eqPCx][probes$eq499304660] |
service::text_search
Parameters
query_string | String | String to search for (* is a wildcard) |
k | String | The model that is the type of object to search for (i.e. Gene) |
Example
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http://api.brain-map.org/api/v2/data/query.xml?criteria= service::text_search[query_string$eq'abat'][k$eqGene] |
pipe::list
Input
The output from the previous pipeline stage in json format.
Parameters
(left hand side of parameter) | The variable id to be set in the pipeline namespace. |
(right hand side of parameter) | A string using simple path syntax. |
Response
A comma separated list made up of the values found according to the path is assigned to the variable. More than one variable may be assigned in a single list pipe.
Notes
A pipe may not be used at the beginning or end of a query pipeline. Pipe::list may be used between model and service stages in any combination. The scope of a variable in a pipe::list stage is from the pipe to the end of the pipeline. Prefix a pipe list variable with a dollar sign ($) to reference it. Use the $in operator when referencing a pipeline variable set by pipe::list because the output is a list.
Fragment
| No Format |
|---|
pipe::list[gene_ids$eq'id'][probe_ids$eq'probes/probe/id'] |
Example
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http://api.brain-map.org/api/v2/data/query.json?criteria= model::Organism[name$il'*sapiens'], pipe::list[xorganism_id$eq'id'], model::Gene[organism_id$in$xorganism_id] |
pipe::replace
Input
The constant string or variable passed into the input parameter
Parameters
pattern | Regular expression pattern to match against |
replacement | String to replace the strings in input that match pattern. |
input | Variable obtained from pipe::list or a constant string. |
output | Name of a variable to assign the results to. |
Response
A string with the substitutions applied is assigned to the output variable.
Fragment
| No Format |
|---|
pipe::replace[pattern$eq'a'][replacement$eq'b'][input$in'abcd'][output$eqexample] |
Example
| No Format |
|---|
http://api.brain-map.org/api/v2/data/query.json?criteria= model::Structure[acronym$eq'HiF'][ontology_id$eq7], pipe::list[path$eq'structure_id_path'], pipe::replace[pattern$eq'$'][replacement$eq'*'][input$in$path][output$eq'descendents'], model::Structure[structure_id_path$il$descendents][ontology_id$eq7] |
pipe::split
Input
The constant string or variable passed into the input parameter
Parameters
pattern | A regular expression pattern to match against. |
input | A variable obtained from pipe::list or a constant string. |
output | The name of a variable to assign the results to. |
Response
An comma-separated list of input string split where the pattern matched.
Fragment
| No Format |
|---|
pipe::split[pattern$eq'x'][input$in'axbxcxd'][output$eqexample] |
Example
| No Format |
|---|
http://api.brain-map.org/api/v2/data/query.json?criteria= model::Structure[acronym$eq'HiF'][ontology_id$eq7],pipe::list[path$eq'structure_id_path'], pipe::replace[pattern$eq'(^\/)|(\/$)'][replacement$eq''][input$in$path][output$eq'path'], pipe::split[pattern$eq'/'][input$in$path][output$eq'ancestors'],model::Structure[id$in$ancestors][ontology_id$eq7] |
SectionDataSet