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Model Name

Description

1. Leaky Integrate and Fire (LIF)

Standard circuit representation of a resistor and capacitor in parallel with a leaky membrane.

2. LIF + Reset Rules (LIF-R)

LIF with biologically-derived threshold and voltage reset rules in addition to a biologically derived threshold decay.

3. LIF + Afterspike Currents (LIF-ASC)

LIF with spike-induced currents to model long-term effects of voltage-activated ion channels.

4. LIF-R + Afterspike Currents (LIF-R-ASC)

LIF with additional Reset Rules and Afterspike Currents.

5. LIF-R-ASC + Threshold Adaptation (LIF-R-ASC-A)

All of the above, with an additional voltage-dependent component of threshold.

Biophysical-Perisomatic

Biophysically realistic, single-neuron model with passive dendrites and active soma.

Biophysical-All Active

Biophysically realistic, single-neuron model with active conductances everywhere.

Morphology

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When available: the Morphology page can be reached either by clicking on the image of the reconstructed cell in the search results page,

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or by clicking on the image of the cell on the Electrophysiological Detail Page.

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Experimental Detail Page - Morphology

details page

The Experimental Detail page includes the morphology summary and a viewer to browse the morphology data. The Morphology Summary includes the location of the cell mapped to the CCF, metadata on the Mouse Line and location of the cell. It also shows the Morphological features most appropriate to the data (see more information in the Morphology whitepaper in Documentation), a thumbnail showing the neuron reconstruction including cortical depth, as well as a thumbnail illustrating the electrophysiology traces.

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