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Aging, Dementia and TBI Allen Brain Observatory

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Description

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Overview

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Overview of methods for the Cell Types database

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Transcriptomics Overview

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Description of methods for single cell RNA isolation and sequence analysis

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Electrophysiology Overview

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Description of methods for tissue processing, electrophysiology data acquisition, and analysis of intrinsic properties

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Morphology Overview

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Description of methods for histological staining, image acquisition, 3D reconstruction and structure-based categorization

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Neuronal Models: GLIF

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Description of the generalized leaky integrate-and-fire single-neuron models

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Neuronal Models: Biophysical - Perisomatic

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Description of the biophysically realistic, single-neuron models with passive dendrites and active soma (perisomatic)

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Neuronal Models: Biophysical - All Active

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Description of the biophysically realistic, single-neuron models with active conductances everywhere (all-active)

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Mouse CCF, Reference Atlas, Version 3 (20162017)

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Overview of the design and implementation of the Allen Mouse Common Coordinate Framework

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Acknowledgement of Collaborators

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Recognition of collaborators and others who provided assistance

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Case Qualification and Donors

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Summary of tissue donor qualification process and information about each donor.

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