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Warning

3-D annotation volumes were updated in the June 2013 release to reflect changes in the atlas drawings and ontology. Also note that the volumes are now in a 32-bit format to large structure identifiers.

Three Four volumetric data files are available for download:

  • atlasVolume: uchar (8bit) grayscale Nissl volume of the reconstructed brain at 25 µm resolution.
  • annotation: uint (32bit) structural annotation volume without fiber tracts at 25 µm resolution. The value represents the ID of the finest level structure annotated for the voxel. Note: the 3-D mask for any structure is composed of all voxels annotated for that structure and all of its descendents in the structure hierarchy.
  • annotationFiber: uint (32bit) fiber tracts annotation volume at 25 µm resolution.
  • gridAnnotation - 200 100 µm: uint (32bit) combined structural and fiber tract annotation volume at grid (200 100 µm) resolution for gene expression analysisprojection analysis.
  • averageTemplate: uint (16bit) average brain template used as registration target.

Volumetric data is stored in an uncompressed format with a simple text header file in MetaImage format.

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