Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Atlas ID

 

Atlas Name

Image Type

Ontology

StructureGraph ID

GraphicGroupLabels

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5499c22739b5d0d1-aeee0878-43fe422f-959f98cb-9efea31c8fe414ebe6805f6c"><ac:plain-text-body><![CDATA[

[1

http://atlas.brain-map.org/atlas?atlas=1]

!P56_Coronal.png

width=32!

"Mouse, P56  Coronal"

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28,159226751]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="baa1e0ed7b742e80-69ed4f76-4d834dee-a0fe9a5d-895a1024094b22198013bf95"><ac:plain-text-body><![CDATA[

[2

http://atlas.brain-map.org/atlas?atlas=2]

!P56_Sagittal.png

width=32!

"Mouse, P56 Sagittal"

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ecb14501010aa1a3-e3b45142-40bb41fe-8300ba92-1b7b3edbc4d7e599c199c049"><ac:plain-text-body><![CDATA[

[181276165

http://atlas.brain-map.org/atlas?atlas=181276165]

!DevMouse_P56.jpg

width=32!

"Developing Mouse, P56"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="417f8ca6324f12d6-b0a8c070-41214340-b7b38f27-f868b500f40f51afb36dd564"><ac:plain-text-body><![CDATA[

[181276164

http://atlas.brain-map.org/atlas?atlas=181276164]

!DevMouse_P14.jpg

width=32!

"Developing Mouse, P14"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,167675952]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9f905a22c36f28f3-42b5ca53-481c4bd7-bf85b568-4f5a78f88fbe9a5e9a3606b8"><ac:plain-text-body><![CDATA[

[181276162

http://atlas.brain-map.org/atlas?atlas=181276162]

!DevMouse_P4.jpg

width=32!

"Developing Mouse, P4"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5a83b9d77f60ce86-9a8c9e49-4ddc41ad-98ffb4a3-74b01e89fdfc7a1c185a0bde"><ac:plain-text-body><![CDATA[

[181276160

http://atlas.brain-map.org/atlas?atlas=181276160]

!DevMouse_E18pt5.jpg

width=32!

"Developing Mouse, E18.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b303e8196881024a-b05b804e-4fec4d64-9f249ca6-54a2f659d290973aae54c2a0"><ac:plain-text-body><![CDATA[

[181276151

http://atlas.brain-map.org/atlas?atlas=181276151]

!DevMouse_E15pt5.jpg

width=32!

"Developing Mouse, E15.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b1f0b4bd4d0ef108-4f50096d-4d4144a9-8468889f-bb97f8ba940c159fe0142b6a"><ac:plain-text-body><![CDATA[

[181276130

http://atlas.brain-map.org/atlas?atlas=181276130]

!DevMouse_E13pt5.jpg

width=32!

"Developing Mouse, E13.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="dd3a2886c543b7f1-5ebd5719-41bf4e15-943d8db0-a5d84731110fb3c918b8fa2b"><ac:plain-text-body><![CDATA[

[181275741

http://atlas.brain-map.org/atlas?atlas=181275741]

!DevMouse_E11pt5.jpg

width=32!

"Developing Mouse, E11.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,126768961]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="008f9af6c05258f9-a1f5c35c-49114d88-9d30992b-b0fe45b113e195e4a057d445"><ac:plain-text-body><![CDATA[

[138322605

http://atlas.brain-map.org/atlas?atlas=138322605]

!Human_34y.jpg

width=32!

"Human, 34 yrs"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

17

 [31,113753815,113753816]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e9852551bb072752-b55cedb4-4955486a-96d090c7-5619bceabd157629975e66c9"><ac:plain-text-body><![CDATA[

[3

http://atlas.brain-map.org/atlas?atlas=3]

!Human_21pcw.jpg

width=25!

"Human, 21 pcw"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bec139cdeaf246b3-0b50ada4-4b454c8a-bf3e81d8-09370df019760de5bac77e22"><ac:plain-text-body><![CDATA[

[138322603

http://atlas.brain-map.org/atlas?atlas=138322603]

!Human_15pcw.jpg

width=20!

"Human, 15 pcw"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

...

Ontology ID

Ontology Name

StructureGraph
ID

Uses

1

"Mouse Brain Atlas"

1

Mouse Brain

  • Reference Atlases
  • Brain Explorer, AGEA
  • Informatics quantification of ISH data
  • Search services
    Mouse Connectivity
  • Informatics quantification of projection data
  • Search services

12

"Developing Mouse Brain Atlas"

17

Developing Mouse Brain

  • Reference Atlases
  • Brain Explorer, AGEA
  • Informatics quantification of ISH data
  • Search services

7

"Human Brain Atlas"

10

Human Brain

  • Annotation of Microarray Sampling Sites
  • Brain Explorer
  • Heatmap and search services
  • "Hot spot" annotation of ISH data

11

"Developing Human Brain Atlas"

16

Developing Human Brain

  • Reference Atlases
  • Annotation of Transcriptome and Microarray Sampling Sites
  • Heatmap and search services
  • "Hot spot" annotation of ISH data

4

"Non-Human Primate Brain Atlas"

8

Non-Human Primate

  • Annotation of Microarray Sampling Sites
  • Heatmap and search services
  • "Hot spot" annotation of ISH data

From the API, Structure and Ontology information can be downloaded in various formats.

Examples:

  • Download the "Human Brain Atlas" ontology as CSV file
    Code Block
  • Download the "Mouse Brain Atlas" ontology as a hierarchically structured json file
    Code Block
    
    http://api.brain-map.org/api/v2/structure_graph_download/1.json