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  • Find Structure ID for "striatum" (id = 10333 )
    Code Block
    http://api.brain-map.org/api/v2/data/query.xml?criteria=model::Structure,
    rma::criteria,[name$il'striatum'],ontology[name$eq'Developing Human Brain Atlas'],
    rma::options[only$eq'structures.id']
    
  • Find Structure ID for "neural plate" (id = 10153)
    Code Block
    http://api.brain-map.org/api/v2/data/query.xml?criteria=model::Structure,
    rma::criteria,[name$il'neural plate'],ontology[name$eq'Developing Human Brain Atlas'],
    rma::options[only$eq'structures.id']
    
  • Differential search for gene-level RNA-Seq data
    Code Block
    http://api.brain-map.org/api/v2/data/query.xml?criteria=service::dev_human_differential
        [set$eq'rna_seq_genes'][structures1$eq10153][structures2$eq10333][sort_by$eq'fold-change']
    
  • Visualize the gene-level RNA-Seq differential search result in the Web application
  • Differential search for exon-level RNA-Seq data
    Code Block
    http://api.brain-map.org/api/v2/data/query.xml?criteria=service::dev_human_differential
        [set$eq'rna_seq_exons'][structures1$eq10153][structures2$eq10333][sort_by$eq'fold-change']
    
  • Differential search for gene-level exon microarray data
    Code Block
    http://api.brain-map.org/api/v2/data/query.xml?criteria=service::dev_human_differential
        [set$eq'exon_microarray_genes'][structures1$eq10153][structures2$eq10333][sort_by$eq'fold-change']
    
  • Differential search for probeset-level exon microarray data
    Code Block
    http://api.brain-map.org/api/v2/data/query.xml?criteria=service::dev_human_differential
        [set$eq'exon_microarray_exons'][structures1$eq10153][structures2$eq10333][sort_by$eq'fold-change']
    
  • Visualize the gene-level RNA-Seq differential search result in the Web application
  • Differential search for exon-level RNA-Seq data

!RNA_Seq_Spatial_Differential|width=400!
Figure: Screenshot of top returns of a differential search for genes with higher expression in the striatum than structures in the neural plate.

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