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• Find Structure ID for "striatum" (id = 10333 )

  Code Block
  http://api.brain-map.org/api/v2/data/query.xml?criteria=model::Structure, rma::criteria,[name$il'striatum'],ontology[name$eq'Developing Human Brain Atlas'], rma::options[only$eq'structures.id']

• Find Structure ID for "neural plate" (id = 10153)

  Code Block
  http://api.brain-map.org/api/v2/data/query.xml?criteria=model::Structure, rma::criteria,[name$il'neural plate'],ontology[name$eq'Developing Human Brain Atlas'], rma::options[only$eq'structures.id']

• Differential search for gene-level RNA-Seq data (set = rna_seq_genes)

  Code Block
  http://api.brain-map.org/api/v2/data/query.xml?criteria=service::dev_human_differential [set$eq'rna_seq_genes'][structures1$eq10153][structures2$eq10333][sort_by$eq'fold-change']

• Differential search for exon-level RNA-Seq data (set = rna_seq_exons )

  Code Block
  http://api.brain-map.org/api/v2/data/query.xml?criteria=service::dev_human_differential [set$eq'rna_seq_exons'][structures1$eq10153][structures2$eq10333][sort_by$eq'fold-change']

• Differential search for gene-level exon microarray data (set = exon_microarray_genes )

  Code Block
  http://api.brain-map.org/api/v2/data/query.xml?criteria=service::dev_human_differential [set$eq'exon_microarray_genes'][structures1$eq10153][structures2$eq10333][sort_by$eq'fold-change']

• Differential search for probeset-level exon microarray data (set = exon_microarray_exons )

  Code Block
  http://api.brain-map.org/api/v2/data/query.xml?criteria=service::dev_human_differential [set$eq'exon_microarray_exons'][structures1$eq10153][structures2$eq10333][sort_by$eq'fold-change']

• Visualize the gene-level RNA-Seq differential search result in the Web application
• Differential search for exon-level RNA-Seq data

Figure: Screenshot of top returns of a differential search for genes with higher expression in the striatum than structures in the neural plate.

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