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- Find Structure ID for "striatum" (id = 10333 )
No Format http://api.brain-map.org/api/v2/data/query.xml?criteria=model::Structure, rma::criteria,[name$il'striatum'],ontology[name$eq'Developing Human Brain Atlas'], rma::options[only$eq'structures.id']
- Find Structure ID for "neural plate" (id = 10153)
No Format http://api.brain-map.org/api/v2/data/query.xml?criteria=model::Structure, rma::criteria,[name$il'neural plate'],ontology[name$eq'Developing Human Brain Atlas'], rma::options[only$eq'structures.id']
- Differential search for gene-level RNA-Seq data (set = rna_seq_genes)
No Format http://api.brain-map.org/api/v2/data/query.xml?criteria=service::dev_human_differential [set$eq'rna_seq_genes'][structures1$eq10153][structures2$eq10333][sort_by$eq'fold-change']
- Differential search for exon-level RNA-Seq data (set = rna_seq_exons )
No Format http://api.brain-map.org/api/v2/data/query.xml?criteria=service::dev_human_differential [set$eq'rna_seq_exons'][structures1$eq10153][structures2$eq10333][sort_by$eq'fold-change']
- Differential search for gene-level exon microarray data (set = exon_microarray_genes )
No Format http://api.brain-map.org/api/v2/data/query.xml?criteria=service::dev_human_differential [set$eq'exon_microarray_genes'][structures1$eq10153][structures2$eq10333][sort_by$eq'fold-change']
- Differential search for probeset-level exon microarray data (set = exon_microarray_exons )
No Format http://api.brain-map.org/api/v2/data/query.xml?criteria=service::dev_human_differential [set$eq'exon_microarray_exons'][structures1$eq10153][structures2$eq10333][sort_by$eq'fold-change']
- Visualize the gene-level RNA-Seq differential search result in the Web application
Figure: Screenshot of top returns of a differential search for genes with higher expression in the striatum than in the whole neural plate.
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- Find Structure ID for "thalamus" (id = 10390)
No Format http://api.brain-map.org/api/v2/data/query.xml?criteria=model::Structure, rma::criteria,[name$il'thalamus'],ontology[name$eq'Developing Human Brain Atlas'], rma::options[only$eq'structures.id']
- Find Structure ID for "transient structures of forebrain" (id = 10506)
No Format http://api.brain-map.org/api/v2/data/query.xml?criteria=model::Structure, rma::criteria,[name$il'transient structures of forebrain'],ontology[name$eq'Developing Human Brain Atlas'], rma::options[only$eq'structures.id']
- Use Structure IDs as parameters to the connected service
No Format http://api.brain-map.org/api/v2/data/query.xml?criteria=service::dev_human_microarray_differential [structures1$eq10506][structures2$eq10390][sort_by$eq'fold-change']
- Visualize the same search result in the Web application
Figure: Screenshot of top returns of a differential search for genes with higher expression in the thalamus than in the transient structures of forebrain. The z-score heatmap shows enrichment in the thalamus relative to other brain regions.
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- Find Probe ID for probe "CUST_11451_PI416261804" (id = 1052410)
No Format http://api.brain-map.org/api/v2/data/query.xml?criteria=model::Probe, rma::criteria,[name$eq'CUST_11451_PI416261804'], rma::options[only$eq'probes.id']
- Find Structure ID for "neural plate" (id = 10153)
No Format http://api.brain-map.org/api/v2/data/query.xml?criteria=model::Structure, rma::criteria,[name$il'neural plate'],ontology[name$eq'Developing Human Brain Atlas'], rma::options[only$eq'structures.id']
- Use Probe and Structure IDs as parameters to the connected service
No Format http://api.brain-map.org/api/v2/data/query.xml?criteria=service::dev_human_microarray_correlation [probes$eq1052410][structures$eq10153]
- Visualize the same search result in the Web application
Figure: Screenshot of top returns of a correlative search for probes with similar expression to a PVALB probe with expression values displayed as a z-score heatmap.
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