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  • projection density = sum of detected pixels / sum of all pixels in division
  • projection intensityenergy = sum of detected pixel intensity / sum of all pixels in division
  • injection_fraction = fraction of pixels belonging to manually annotated injection site
  • injection_density = density of detected pixels projection energy = projection intensity¬†* projection densitywithin the manually annotated injection site
  • injection_energy = energy of detected pixels within the manually annotated injection site
  • data_mask =

3-D grids were updated in the May 2015 release to reflect the remapping to the new Allen Mouse Common Coordinate Framework (CCFv3), higher resolution computation and new compress data format. 3-D grids from the October 2014 release (mapped to CCFv2) can be access through our data download server (see instructions).