...
- All cells in the "Mouse Cell Types" Product
No Format http://api.brain-map.org/api/v2/data/query.xml?criteria= model::Specimen ,rma::criteria,[is_cell_specimen$eq'true'],products[name$eq'Mouse Cell Types'] ,rma::include,structure,donor(transgenic_lines),specimen_tags,cell_soma_locations ,rma::options[num_rows$eqall]
- All cells tagged with 'dendrite type - spiny'
No Format http://api.brain-map.org/api/v2/data/query.xml?criteria= model::Specimen ,rma::criteria,[is_cell_specimen$eq'true'],products[name$eq'Mouse Cell Types'] ,rma::include, structure,donor(transgenic_lines),specimen_tags[name$eq'dendrite type - spiny'],cell_soma_locations ,rma::options[num_rows$eqall]
- All cells annotated to be in layer 4
No Format http://api.brain-map.org/api/v2/data/query.xml?criteria= model::Specimen ,rma::criteria,[is_cell_specimen$eq'true'],products[name$eq'Mouse Cell Types'] ,rma::include,structure[name$il'*layer 4*'],donor(transgenic_lines),specimen_tags,cell_soma_locations ,rma::options[num_rows$eqall]
Electrophysiology
All cells in the Allen Cell Types Database have electrophysiological recordings of responses to stimuli from a common set of current injection protocols. Please see the (TODO) electrophysiology technical white paper for details on specimen selection, tissue processing, recording, and quality control.
The Cell Types Database categorizes detailed stimulus protocols into set of high level descriptions:
Stimulus Group Name | Description |
|---|---|
Short Square |
|
Short Square - Hold -60mV |
|
Short Square - Hold -70mV |
|
Short Square - Hold -80mV |
|
Short Square - Triple |
|
Long Square |
|
Square - 2s Suprathreshold |
|
Square - 0.5ms Subthreshold |
|
Ramp |
|
Ramp to Rheobase |
|
Noise 1 |
|
Noise 2 |
|
Test |
|
Stimulus sweeps that pass quality control standards are available for download as Neurodata Without Borders (NWB) files.