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The API provides programmatic access to the microscopy images used for reconstruction, axis-oriented projections of those images, and morphological reconstructions. Example queries

Examples:

  • Find all cells with morphological images
No Format

http://api.brain-map.org/api/v2/data/query.xml?
criteria=model::Specimen
,rma::criteria,[is_cell_specimen$eq'true'],data_sets
  • Find projection image IDs for layer 4 spiny cell (TODOSpecimen 313862022):
No Format

http://api.brain-map.org/api/v2/data/query.xml?
criteria=model::ProjectionImage
,rma::criteria,[specimen_id$eq313862022]
  • Download an image from its ID

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  • Download the reconstruction file
No Format
  • Download all of the morphology features for Scnn1a cell 313862022
...
 No Format
http://api.brain-map.org/api/v2/data/query.xml?
criteria=model::Specimen,rma::criteria,neuronal_models(neuronal_model_template[name$ildescription$il'*LIFGLIF*'])

  • Download all GLIF models for Scnn1a-Tg3 cell 469803127
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