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The API provides programmatic access to the microscopy images used for reconstruction, axis-oriented projections of those images, and morphological reconstructions.  A cell can have up to four axis-oriented projections of the images used for reconstruction:

  • XY minimum intensity projection
  • YZ minimum intensity projection
  • XY maximum intensity projection
  • YZ maximum intensity projection

The reconstruction images display a dark biocytin-filled cell on a light background.  The maximum intensity projections are value-inverted versions of the minimum intensity projections, displaying a light cell on a dark background.


  • Find all cells with morphological images