Atlas Drawings and Ontologies
A set of high resolution digital reference atlases have been created to provide neuroanatomical context to the in situ hybridization and axonal projection data.
From the API, you can:
- Download the underlying high resolution histological images
- Download the colorized and label atlas images
- Download atlas drawings in SVG (scalable vector graphics) format
- Download the associated structural ontology
The following atlases are available through the API
Atlas ID |
|
Atlas Name |
Image Type |
Ontology |
StructureGraph ID |
GraphicGroupLabels |
|||
|---|---|---|---|---|---|---|---|---|---|
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="44008adf-4604-4628-8bca-98c47291b17a"><ac:plain-text-body><![CDATA[ |
1 |
|
"Mouse, P56 Coronal" |
"Atlas - Adult Mouse" |
"Mouse Brain Atlas" |
1 |
[28,159226751] |
]]></ac:plain-text-body></ac:structured-macro> |
|
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1ac1bd39-e930-46ac-9c1f-73afd38bfeca"><ac:plain-text-body><![CDATA[ |
2 |
!http://api.brain-map.org/api/v2/atlas_image_download/100883869?downsample=4&annotation=true |
width=32! |
"Mouse, P56 Sagittal" |
"Atlas - Adult Mouse" |
"Mouse Brain Atlas" |
1 |
[28] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3b2f662c-2673-425b-9556-cecb80c2da04"><ac:plain-text-body><![CDATA[ |
181276165 |
|
"Developing Mouse, P56" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
|
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="da0c319a-84f4-4e02-b00d-0c647931853f"><ac:plain-text-body><![CDATA[ |
181276164 |
|
"Developing Mouse, P14" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32,167675952] |
]]></ac:plain-text-body></ac:structured-macro> |
|
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="952d5cb2-954a-48e0-a7eb-9fbe2a5430bd"><ac:plain-text-body><![CDATA[ |
181276162 |
|
"Developing Mouse, P4" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
|
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f6d8bda3-89b0-42ee-82cc-ec76ac0a98ec"><ac:plain-text-body><![CDATA[ |
181276160 |
|
"Developing Mouse, E18.5" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
|
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8d418470-67c4-4cac-8d8a-266005c01b04"><ac:plain-text-body><![CDATA[ |
181276151 |
|
"Developing Mouse, E15.5" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
|
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c68d15e4-91f9-4b1f-8c13-baf84e49c298"><ac:plain-text-body><![CDATA[ |
181276130 |
|
"Developing Mouse, E13.5" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
|
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7f3e4dec-d938-47fb-94c0-88607cb3c3af"><ac:plain-text-body><![CDATA[ |
181275741 |
|
"Developing Mouse, E11.5" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32,126768961] |
]]></ac:plain-text-body></ac:structured-macro> |
|
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0cd2b822-2bcd-4f64-acca-5912127b2ef7"><ac:plain-text-body><![CDATA[ |
138322605 |
|
"Human, 34 yrs" |
"Atlas - Developing Human" |
"Developing Human Brain Atlas" |
17 |
[31,113753815,113753816] |
]]></ac:plain-text-body></ac:structured-macro> |
|
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a22b822c-7869-4ea4-9c61-5b2f43b65e36"><ac:plain-text-body><![CDATA[ |
3 |
|
"Human, 21 pcw" |
"Atlas - Developing Human" |
"Developing Human Brain Atlas" |
16 |
[31] |
]]></ac:plain-text-body></ac:structured-macro> |
|
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f9b200c3-158d-431b-849a-e827dbab47de"><ac:plain-text-body><![CDATA[ |
138322603 |
|
"Human, 15 pcw" |
"Atlas - Developing Human" |
"Developing Human Brain Atlas" |
16 |
[31] |
]]></ac:plain-text-body></ac:structured-macro> |